View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5644_low_1 (Length: 442)
Name: NF5644_low_1
Description: NF5644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5644_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 20 - 430
Target Start/End: Original strand, 22820220 - 22820626
Alignment:
| Q |
20 |
ttggagcaatccgaaatggattaacgaccaccatattggatgaggattatgaatatcattaagtgccnnnnnnnnnnnngatgcattaactgtcacaaat |
119 |
Q |
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| T |
22820220 |
ttggagcaatccgaaatggattaac---caccatattggatgaggattatgaatatcattaagtgccaaaaagaaaaa-gatgcattaactgtcacaaat |
22820315 |
T |
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| Q |
120 |
gtgtaaggaatgattttctcacaacagttaaaatgtcataatcaaaattagggaatcaaattaatgggtttagctttgtaattaaacggtggaaagcaag |
219 |
Q |
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| T |
22820316 |
gtgtaaggaatgattttctcacaacagttaaaatgtcataatcaaaattagggaatcaaattaatgggtttagctttgtaattaaacggtggaaagcaag |
22820415 |
T |
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| Q |
220 |
attcctcagtaatgttcagcctattcaacctggcaaaggaataacctatgtggatttggtcaaaaaagtgcaaaaactttgtcttcttcttgtaatccta |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22820416 |
attcctcagtaatgttcagcctattcaacctggcaaaggaataacctatgtggatttggtcaaaaaagtgcaaaaactttgtcttcttcttgtaatccta |
22820515 |
T |
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| Q |
320 |
atgagcttatacattcatgcactcattcttaattgctgaaaggacctttgttgcttaaaaaggtccaaaaataaaatcaattcgtttattgataatcaca |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
22820516 |
atgagcttatacattcatgcactcattcttaattgctgaaaggacctttgttgcttaaaaaggtccaaaaataaaatcaattcgttcattgataatcaca |
22820615 |
T |
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| Q |
420 |
attcacaggtt |
430 |
Q |
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||||||||||| |
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| T |
22820616 |
attcacaggtt |
22820626 |
T |
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