View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5644_low_12 (Length: 285)

Name: NF5644_low_12
Description: NF5644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5644_low_12
NF5644_low_12
[»] chr1 (1 HSPs)
chr1 (1-285)||(5170502-5170790)


Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 5170790 - 5170502
Alignment:
Q  1 aatttaaataaacatcatcattctatttcgaaccaacgatcaagggtgtgacgactatgtgaatgcgttgaattttttaatgcagtcaacccgatttcaa 100  Q
    ||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||||||||||| | ||||||||||||||||| |||||||||||||    
T  5170790 aatttaaataaacatcaccattctatttcgaatcaacgatcaaggatgtgacgactatgtgaatgcctcgaattttttaatgcagttaacccgatttcaa 5170691  T
Q  101 attcagagtctttttgccatgttgccacttcttgatagtagctcatcatgacagcctttggtt----tttcatttcactttcatccattaaatgttgctc 196  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    |||||||||||||||||||||||||||||||||    
T  5170690 attcagagtctttttgccatgttgccacttcttgatagtagcccatcatgacagcctttggttttgctttcatttcactttcatccattaaatgttgctc 5170591  T
Q  197 caactctaacaacctctttacttccatatgttacagatatgtactatcaacataaagtatgaactcagataataacattgttgaaactt 285  Q
    ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5170590 caactctaacaacctctttacttccatatgttacaaacatgtactatcaacataaagtatgaactcagataataacattgttgaaactt 5170502  T

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