View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5644_low_13 (Length: 259)
Name: NF5644_low_13
Description: NF5644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5644_low_13 |
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| [»] scaffold0039 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 10 - 240
Target Start/End: Complemental strand, 34292216 - 34291986
Alignment:
| Q |
10 |
aagaatatgcatggttttgatttaggttggagtttatttttcatatatggttttaaccaaggaaaacacaagcatccaaatgagacaagtttattgtagt |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
34292216 |
aagaatatgcatggttttgatttaggttggagtttatttttcatatatggttttaaccaaggaaaacacaagcatccaaatgagtgaagtttattgtagt |
34292117 |
T |
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| Q |
110 |
ctggtatggttttgaataagatttcaaatggagatttcatgtgaattataggcttaggaattctattaatcaaatatacagctgtagtaaatgcaaatga |
209 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |
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| T |
34292116 |
ctggtatggttttgaataagatttcaaaaggagatttcatgtgaattataggcttaggcattctattaatcaaatatgcagctgtagtaaatgcaaatga |
34292017 |
T |
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| Q |
210 |
ccataattgtgaaggtaaattagcatgatgc |
240 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
34292016 |
ccataattgtgaaggtaaattagcatgatgc |
34291986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 10 - 240
Target Start/End: Original strand, 24487668 - 24487898
Alignment:
| Q |
10 |
aagaatatgcatggttttgatttaggttggagtttatttttcatatatggttttaaccaaggaaaacacaagcatccaaatgagacaagtttattgtagt |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
24487668 |
aagaatatgcatggttttgatttaggttggagtttatttttcatatatggttttaaccaaggaaaacacaagcatccaaatgagtgaagtttattgtagt |
24487767 |
T |
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| Q |
110 |
ctggtatggttttgaataagatttcaaatggagatttcatgtgaattataggcttaggaattctattaatcaaatatacagctgtagtaaatgcaaatga |
209 |
Q |
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| T |
24487768 |
ctggtatggttttgaataagatttcaaaaggagatttcatgtgaattataggcttaggcattctattaatcaaatatgcagctgtagtaaatgcaaatga |
24487867 |
T |
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| Q |
210 |
ccataattgtgaaggtaaattagcatgatgc |
240 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
24487868 |
ccataattgtgaaggtaaattagcatgatgc |
24487898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 10 - 240
Target Start/End: Original strand, 24496002 - 24496232
Alignment:
| Q |
10 |
aagaatatgcatggttttgatttaggttggagtttatttttcatatatggttttaaccaaggaaaacacaagcatccaaatgagacaagtttattgtagt |
109 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
24496002 |
aagaatatgcatggttttgatttaggttggagtttatttttcatatatggttttaaccaaggaaaacacaagcatccaaatgagtgaagtttattgtagt |
24496101 |
T |
|
| Q |
110 |
ctggtatggttttgaataagatttcaaatggagatttcatgtgaattataggcttaggaattctattaatcaaatatacagctgtagtaaatgcaaatga |
209 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |
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| T |
24496102 |
ttggtatggttttgaataagatttcaaaaggagatttcatgtgaattataggcttaggcattctattaatcaaatatgcagctgtagtaaatgcaaatga |
24496201 |
T |
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| Q |
210 |
ccataattgtgaaggtaaattagcatgatgc |
240 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
24496202 |
ccataattgtgaaggtaaattagcatgatgc |
24496232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 13 - 114
Target Start/End: Original strand, 60042 - 60143
Alignment:
| Q |
13 |
aatatgcatggttttgatttaggttggagtttatttttcatatatggttttaaccaaggaaaacacaagcatccaaatgagacaagtttattgtagtctg |
112 |
Q |
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||||| || ||||| ||| |||||||||||||||||||| | ||||| ||||||||||| || |||||||||||||||||| |||||||| ||||||| |
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| T |
60042 |
aatatacacggtttagatctaggttggagtttatttttcgtgtatggctttaaccaagggaagcacaagcatccaaatgagtggagtttattatagtctg |
60141 |
T |
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| Q |
113 |
gt |
114 |
Q |
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|| |
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| T |
60142 |
gt |
60143 |
T |
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