View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5644_low_17 (Length: 239)
Name: NF5644_low_17
Description: NF5644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5644_low_17 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 28561114 - 28560899
Alignment:
| Q |
18 |
gcaacagtgttgtactttgaagattttgatgggaaaatcaaactattcgaagagaaaatatacataaatgatttatgatnnnnnnnnnnnnnnnnnnnnn |
117 |
Q |
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| T |
28561114 |
gcaacagtgttgtactttgaagattttgatgggaaaatcaaactattcgaagagaaaac-tacataaatgatttatgataaaaaataaaaaaaaa----- |
28561021 |
T |
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| Q |
118 |
tgtttctattcaatgattggatccacagaaagagnnnnnnnttaaacacgtttctttttggtagagttatatattgagtttgagatattgcccaagcagt |
217 |
Q |
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| T |
28561020 |
tgtttctattcaatgattggatccacagaaagagaaaaaaattaaacacatttttttttggtagagttatatattgagtttgagatattgcccaagcagt |
28560921 |
T |
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| Q |
218 |
gtacatatgtagacatacattc |
239 |
Q |
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|||||||||||||||||||||| |
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| T |
28560920 |
gtacatatgtagacatacattc |
28560899 |
T |
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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 24690094 - 24690048
Alignment:
| Q |
18 |
gcaacagtgttgtactttgaagattttgatgggaaaatcaaactatt |
64 |
Q |
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|||||||||| ||| |||||| |||||||||||||||| |||||||| |
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| T |
24690094 |
gcaacagtgtagtaatttgaatattttgatgggaaaataaaactatt |
24690048 |
T |
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