View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5644_low_18 (Length: 237)
Name: NF5644_low_18
Description: NF5644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5644_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 5923756 - 5923529
Alignment:
| Q |
1 |
tttgttgatactattgaaaaatttattcatgcaaattaaatttcttagaagataagttacactctttaagaaacttatgtatgaatgttgagaacaaaag |
100 |
Q |
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| T |
5923756 |
tttgttgatactatagaaaaatttattcatgcaaattaaatttcttagaagataatttacactctttaagaaacttatgtatgaatgttgagaacaaaag |
5923657 |
T |
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| Q |
101 |
gaattagaataataaaattaattataagatgtgatagagttaccaccagatccatagttgaggctgaaaagagcaaataaaattccaatggttaggaaaa |
200 |
Q |
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| T |
5923656 |
gaattagaataataaaattaataataagatgtgatagagttaccaccagatccatagttgaggctgaaaagagcaaataaaattccaatgcttaggaaaa |
5923557 |
T |
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| Q |
201 |
ttcttcctccaagcttcatcatgatgat |
228 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
5923556 |
ttcttcctccaagcttcatcatgatgat |
5923529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 23 - 228
Target Start/End: Complemental strand, 5914870 - 5914670
Alignment:
| Q |
23 |
ttattcatgcaaattaaatttcttagaagataagttacactctttaagaaacttatgtatgaatgttgagaacaaaaggaattagaataataaaattaat |
122 |
Q |
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|||||||||||||||||| ||||||||| |||| ||||||| ||||||||||||||||||||||||| ||||||||| | || |||| ||||||||| |
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| T |
5914870 |
ttattcatgcaaattaaacttcttagaacataatttacact--ttaagaaacttatgtatgaatgttgtgaacaaaagcagttcaaatactaaaattaag |
5914773 |
T |
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| Q |
123 |
tataagatgtgatagagttaccaccagatccatagttgaggctgaaaagagcaaataaaattccaatggttaggaaaattcttcctccaagcttcatcat |
222 |
Q |
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| T |
5914772 |
aataagatgtgatagagttacca---gatccatagttgaggctgaaaagagcaaataaaattccaaaggttaggaaaatgcttcctcctagcttcatcat |
5914676 |
T |
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| Q |
223 |
gatgat |
228 |
Q |
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|||||| |
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| T |
5914675 |
gatgat |
5914670 |
T |
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