View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5644_low_20 (Length: 227)
Name: NF5644_low_20
Description: NF5644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5644_low_20 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 7 - 227
Target Start/End: Original strand, 30164161 - 30164381
Alignment:
| Q |
7 |
gttgaaccgaatgttgtctcttataactcagtcatcaatggtttcgcacaaagtggcttcggcgaagaaactctcaatatgtataaaagaatgcagaatg |
106 |
Q |
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||||||| ||||||||||||| ||||||||||||||||||||||| |||||| |||||| ||||||||| |||||||||||||||||||||||||||||| |
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| T |
30164161 |
gttgaactgaatgttgtctctaataactcagtcatcaatggtttcacacaaaatggctttggcgaagaagctctcaatatgtataaaagaatgcagaatg |
30164260 |
T |
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| Q |
107 |
aaagccttgaacccaaccgtgttactttccttgctgatctttcagcctgtactcatgcaggactgattgaagagggacggaatttatttgacaccatgaa |
206 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30164261 |
aaagccttgaacccaaccgtgttactttccttgctgttctttcagcctgtactcatgcaggactgattgaagagggacggaatttatttgacaccatgaa |
30164360 |
T |
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| Q |
207 |
atctcgttatcgaattgagcc |
227 |
Q |
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||||||||| |||| |||||| |
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| T |
30164361 |
atctcgttaccgaaatgagcc |
30164381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 7 - 227
Target Start/End: Original strand, 30003718 - 30003938
Alignment:
| Q |
7 |
gttgaaccgaatgttgtctcttataactcagtcatcaatggtttcgcacaaagtggcttcggcgaagaaactctcaatatgtataaaagaatgcagaatg |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |||||| |||||| ||||||||||||||||||||||| |
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| T |
30003718 |
gttgaaccgaatgttgtctcttataactcagtcatcaatggtttcgcacaaaatggctttggtgaagaagctctcagtatgtataaaagaatgcagaatg |
30003817 |
T |
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| Q |
107 |
aaagccttgaacccaaccgtgttactttccttgctgatctttcagcctgtactcatgcaggactgattgaagagggacggaatttatttgacaccatgaa |
206 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| | || ||||| |
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| T |
30003818 |
aaagccttgaacccaaccgtgttactttccttgctgttctttcagcctgtactcatgcaggactgattgaagagggatggaatttatttaatacaatgaa |
30003917 |
T |
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| Q |
207 |
atctcgttatcgaattgagcc |
227 |
Q |
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||||||||| |||||||||| |
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| T |
30003918 |
atctcgttacggaattgagcc |
30003938 |
T |
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