View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5644_low_7 (Length: 337)
Name: NF5644_low_7
Description: NF5644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5644_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 10 - 319
Target Start/End: Complemental strand, 31705083 - 31704776
Alignment:
| Q |
10 |
aatatcggtatttttgttaattgagttgggttttatggacaaaattggtagttcttaattaaagttgttttgtacttttgttattaatatatagatatag |
109 |
Q |
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| T |
31705083 |
aatatcggtattt--gttaattgagttgggttttatggacaaaattggtagttcttaattaaagttgttttgtacttttgttattaatatatagatatag |
31704986 |
T |
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| Q |
110 |
attgagcagaaatgataacattaacacagtaatgaaagcccacaaatactattttcaagcagctcaacatataaagataaatatcattatgctcctaaac |
209 |
Q |
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| T |
31704985 |
attgagcagaaatgataacattaacacagtaatgaaagcccacaaatactattttcaagcagctcaacatataaagataaatatcattatgctcctaaac |
31704886 |
T |
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| Q |
210 |
aaaaagatcttataatatagatacttagattaaccacattacaacattttcaaagtttctagttggaatccaagtaaaagcttcacagagttatatttct |
309 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
31704885 |
aaaaagatcttataatatagatacttagattaaccatattacaacattttcaaagtttctagttggaatccaagtaaaagcttgacagagttatatttct |
31704786 |
T |
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| Q |
310 |
ttccctttct |
319 |
Q |
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|||||||||| |
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| T |
31704785 |
ttccctttct |
31704776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 261 - 319
Target Start/End: Complemental strand, 31654466 - 31654408
Alignment:
| Q |
261 |
aaagtttctagttggaatccaagtaaaagcttcacagagttatatttctttccctttct |
319 |
Q |
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|||||||| || |||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
31654466 |
aaagtttcaaggtggaatccaagtaaaagcttgacagagttatatttctttccctttct |
31654408 |
T |
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