View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5644_low_8 (Length: 336)
Name: NF5644_low_8
Description: NF5644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5644_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 327
Target Start/End: Original strand, 15039464 - 15039789
Alignment:
| Q |
1 |
tatgttgttctattgaaaccctatattgttaacactaagaagtagttcaaggcaataataatcatgacaataaggtaaaaaggttgtacttattcaaatt |
100 |
Q |
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| T |
15039464 |
tatgttgttctattgaaaccctatattgttaacactaagaagtagttcaaggcaataataatcatgacaataaggtaaaa-ggttgtacttattcaaatt |
15039562 |
T |
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| Q |
101 |
ttactcatatcgttcattgtgagaatcatggaccaaattcaatagtaatgttagactaaattgatatagtaagcggttaaaatatatggttaatttggtc |
200 |
Q |
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| T |
15039563 |
ttactcatatcgttcattgtgagaatcatggaccaaattcaatagtaatgttagactaaattgatatagtaagcggttaaaatatatggttaatttggtc |
15039662 |
T |
|
| Q |
201 |
taacataatttttatgatcgcagaattttactcctaaatatatgttaaaatactaacagaattttatgaaccaatttttctcgtttgcttcataaatatt |
300 |
Q |
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|||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |
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| T |
15039663 |
taacataattttaatgatcacagaattttactcctaaatatatgttaaaatactaacagaattttatgaaccaatttttctcttttggttcataaatatt |
15039762 |
T |
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| Q |
301 |
ctgttagacctcttagtagagtattat |
327 |
Q |
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||| ||||||||||||||||||||||| |
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| T |
15039763 |
ctgctagacctcttagtagagtattat |
15039789 |
T |
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