View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5645-Insertion-1 (Length: 385)
Name: NF5645-Insertion-1
Description: NF5645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5645-Insertion-1 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 7 - 385
Target Start/End: Complemental strand, 21818667 - 21818289
Alignment:
| Q |
7 |
aatacctttccatgaaattgacatgcactaaacaacaacaaaaaatacgtcattaacaatgcatatctgnnnnnnnnnnnnnnngtgactattttgnnnn |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
21818667 |
aatacctttccatgaaattgacatgcactaaacaacaacaaaaaatacgtcattaacaatgcatatctgaaaaaagagaaaaaagtgactattttgtttt |
21818568 |
T |
|
| Q |
107 |
nnnggcatgaaagacaaaataaattgcgtaattaatctagnnnnnnntcataattttccccaactcaatgcatttggctcaacaagtaattattcctgcg |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21818567 |
tttggcatgaaagacaaaataaattgcgtaattaatctagaaaaaaatcataattttccccaactcaatgcatttggctcaacaagtaattattcctgcg |
21818468 |
T |
|
| Q |
207 |
gaggaacaacctgatagcttgcaatggaagcatgaccaatctggtgaattatgtctcaaggaggcatataatttcaaacatcatcaatttcaagagcttc |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21818467 |
gaggaacaacctgatagcttgcaatggaagcatgaccaatctggtgaattatgtctcaaggaggcatataatttcaaacatcatcaatttcaagagcttc |
21818368 |
T |
|
| Q |
307 |
attgggccaaaacgatatggagtgtagatatcccaccttcaaaatccatgttcatttggagattgaagcacaacaaagt |
385 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21818367 |
attgggccaaaacgatatggagtgtagatatcccaccttcaaaatccatgttcatttggagattgaagcacaacaaagt |
21818289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 273 - 383
Target Start/End: Complemental strand, 16010709 - 16010599
Alignment:
| Q |
273 |
tataatttcaaacatcatcaatttcaagagcttcattgggccaaaacgatatggagtgtagatatcccaccttcaaaatccatgttcatttggagattga |
372 |
Q |
| |
|
||||| |||||||||||||| |||||||| || |||||||||||||| || |||||||| ||| |||| || |||||||| | || |||||||||||| |
|
|
| T |
16010709 |
tataaattcaaacatcatcagtttcaagatctccattgggccaaaaccatttggagtgttgatgtccctccctcaaaatctctatttgtttggagattga |
16010610 |
T |
|
| Q |
373 |
agcacaacaaa |
383 |
Q |
| |
|
| |||||||| |
|
|
| T |
16010609 |
tgtacaacaaa |
16010599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 305 - 352
Target Start/End: Original strand, 43581136 - 43581183
Alignment:
| Q |
305 |
tcattgggccaaaacgatatggagtgtagatatcccaccttcaaaatc |
352 |
Q |
| |
|
|||||||||||| || ||||||||||| ||||| |||||||||||||| |
|
|
| T |
43581136 |
tcattgggccaatacaatatggagtgttgatattccaccttcaaaatc |
43581183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University