View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5645-Insertion-2 (Length: 844)

Name: NF5645-Insertion-2
Description: NF5645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5645-Insertion-2
NF5645-Insertion-2
[»] scaffold0055 (37 HSPs)
scaffold0055 (6-767)||(12645-13402)
scaffold0055 (170-844)||(54783-55457)
scaffold0055 (170-714)||(68426-68970)
scaffold0055 (170-432)||(33716-33980)
scaffold0055 (170-387)||(52890-53107)
scaffold0055 (6-225)||(52819-53036)
scaffold0055 (6-225)||(68355-68572)
scaffold0055 (6-225)||(33645-33864)
scaffold0055 (20-225)||(54726-54929)
scaffold0055 (41-256)||(13407-13622)
scaffold0055 (691-835)||(42600-42744)
scaffold0055 (170-316)||(13438-13586)
scaffold0055 (6-146)||(71275-71417)
scaffold0055 (621-774)||(11946-12099)
scaffold0055 (621-772)||(34822-34972)
scaffold0055 (77-165)||(13405-13493)
scaffold0055 (170-239)||(71347-71417)
scaffold0055 (202-256)||(54653-54707)
scaffold0055 (202-256)||(68296-68350)
scaffold0055 (202-256)||(71216-71270)
scaffold0055 (621-714)||(19314-19406)
scaffold0055 (621-714)||(43612-43704)
scaffold0055 (621-714)||(56327-56419)
scaffold0055 (621-714)||(74999-75091)
scaffold0055 (202-256)||(13631-13685)
scaffold0055 (202-256)||(52760-52814)
scaffold0055 (723-780)||(3911-3968)
scaffold0055 (118-165)||(13629-13676)
scaffold0055 (261-316)||(71347-71402)
scaffold0055 (621-714)||(35939-36031)
scaffold0055 (202-254)||(33586-33638)
scaffold0055 (118-165)||(54662-54709)
scaffold0055 (118-165)||(68305-68352)
scaffold0055 (118-165)||(71225-71272)
scaffold0055 (256-316)||(13531-13591)
scaffold0055 (121-165)||(52772-52816)
scaffold0055 (118-155)||(33595-33632)
[»] scaffold0052 (34 HSPs)
scaffold0052 (6-767)||(71133-71890)
scaffold0052 (170-844)||(52389-53063)
scaffold0052 (170-835)||(29190-29855)
scaffold0052 (170-714)||(49798-50342)
scaffold0052 (170-432)||(62084-62348)
scaffold0052 (170-379)||(19918-20127)
scaffold0052 (6-225)||(29119-29336)
scaffold0052 (6-225)||(62200-62419)
scaffold0052 (6-225)||(49727-49944)
scaffold0052 (20-225)||(19861-20064)
scaffold0052 (20-225)||(52332-52535)
scaffold0052 (41-256)||(70913-71128)
scaffold0052 (170-316)||(70949-71097)
scaffold0052 (621-774)||(72436-72589)
scaffold0052 (77-165)||(71042-71130)
scaffold0052 (621-749)||(61115-61242)
scaffold0052 (202-256)||(29060-29114)
scaffold0052 (202-256)||(49668-49722)
scaffold0052 (621-714)||(3196-3288)
scaffold0052 (621-714)||(17721-17813)
scaffold0052 (621-714)||(41212-41304)
scaffold0052 (621-714)||(53931-54023)
scaffold0052 (202-256)||(19788-19842)
scaffold0052 (202-256)||(70850-70904)
scaffold0052 (723-780)||(80567-80624)
scaffold0052 (118-165)||(70859-70906)
scaffold0052 (210-256)||(52267-52313)
scaffold0052 (202-254)||(62426-62478)
scaffold0052 (118-165)||(29069-29116)
scaffold0052 (118-165)||(49677-49724)
scaffold0052 (118-165)||(52268-52315)
scaffold0052 (121-165)||(19800-19844)
scaffold0052 (256-316)||(70944-71004)
scaffold0052 (118-155)||(62432-62469)
[»] scaffold0021 (17 HSPs)
scaffold0021 (170-844)||(48060-48734)
scaffold0021 (175-844)||(94664-95334)
scaffold0021 (423-794)||(34068-34440)
scaffold0021 (6-325)||(33743-34063)
scaffold0021 (6-225)||(47989-48206)
scaffold0021 (82-225)||(94664-94805)
scaffold0021 (621-774)||(50744-50897)
scaffold0021 (621-780)||(49605-49763)
scaffold0021 (202-256)||(33684-33738)
scaffold0021 (202-256)||(47930-47984)
scaffold0021 (667-780)||(39713-39825)
scaffold0021 (643-768)||(34876-35000)
scaffold0021 (625-780)||(38602-38757)
scaffold0021 (407-477)||(34220-34290)
scaffold0021 (621-694)||(96321-96394)
scaffold0021 (118-165)||(33693-33740)
scaffold0021 (118-165)||(47939-47986)
[»] chr6 (12 HSPs)
chr6 (169-691)||(9476336-9476855)
chr6 (39-224)||(9476300-9476484)
chr6 (166-467)||(9485376-9485676)
chr6 (8-235)||(9485514-9485740)
chr6 (130-254)||(9485749-9485872)
chr6 (131-254)||(9476138-9476261)
chr6 (470-679)||(9480536-9480743)
chr6 (202-305)||(9476116-9476221)
chr6 (223-303)||(9485790-9485872)
chr6 (413-477)||(9480571-9480635)
chr6 (88-161)||(9476188-9476261)
chr6 (82-161)||(9485749-9485827)
[»] scaffold0152 (3 HSPs)
scaffold0152 (621-835)||(18741-18951)
scaffold0152 (621-835)||(33761-33971)
scaffold0152 (621-835)||(37567-37777)
[»] scaffold0515 (1 HSPs)
scaffold0515 (621-835)||(11171-11381)
[»] chr3 (5 HSPs)
chr3 (257-448)||(19657064-19657256)
chr3 (166-235)||(19657187-19657256)
chr3 (48-142)||(19657187-19657281)
chr3 (39-106)||(32148912-32148978)
chr3 (202-247)||(32148843-32148888)
[»] chr2 (2 HSPs)
chr2 (166-254)||(9269560-9269648)
chr2 (166-252)||(9269722-9269808)


Alignment Details
Target: scaffold0055 (Bit Score: 651; Significance: 0; HSPs: 37)
Name: scaffold0055
Description:

Target: scaffold0055; HSP #1
Raw Score: 651; E-Value: 0
Query Start/End: Original strand, 6 - 767
Target Start/End: Complemental strand, 13402 - 12645
Alignment:
Q  6 caactcaaacacgacaaagattaagaggacgtgagtcaacccaaattcaatgccacgagagagtttcgtatgcaagtgctagtcgccccgcagcgttaca 105  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  13402 caactcaaacacgacaaagattaagaggacgtgagtcaacctaaattcaatgccacgagagagtttcgtatgcaagtgctggtcgccccgcagcgttaca 13303  T
Q  106 agggcacgattatttccgaggagggaccaacacggctatgtttattgaccagcactgcaagtaagcaaatgctagtcgccccgcagcgttacaagggcac 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  13302 agggcacgattatttccgaggagggaccaacacggctatgtttattgaccagcactgtaagtaagcaaatgctcgtcgccccgcagcgttacaagggcac 13203  T
Q  206 aagtttttccgaggagggaccaacacggctatgtttattgacctgcactgcgtaagcaaatgctagtcgccccgcagcgttacaagggcacaagtttttc 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13202 aagtttttccgaggagggaccaacacggctatgtttattgacctgcactacgtaagcaaatgctagtcgccccgcagcgttacaagggcacaagtttttc 13103  T
Q  306 cgagaagggacgtgcacgggtttcttactagctacgctagccgccccaccgtacatgggcggcgtgagaaagagggagaaattttgctttaccgtgacca 405  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||    
T  13102 cgagaagggacgtgcacgggtttcttactagctacgctagccgccccaccgtacatcggcggcgtgggaaagagggagaaattttgctttaccgtgacca 13003  T
Q  406 agacagagtttggccaagacgaggcatgaacaaacattgaactgcatgcttggcctgtgcctgcccaagtcacgagcggcaagacgaccccctctttccc 505  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||    
T  13002 agacagagtttggccaagacgaggcatgaacaaacgttgaactgcatgcttggcttgtgcctgcccaactcacgagcggcaagacgaccccctctttccc 12903  T
Q  506 acgctgggtggctgggcctttccgacgggacgtggaaaatatgaatcaatcctactcttccatgacaacaacaaag-ttggccaagacgaggcatgaaca 604  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||    
T  12902 acgctgggtggctaggcctttccgacgggacgtggaaaatatgaatcaatcctactcttccatgacaacgacaaagtttggccaagacgaggcatgaaca 12803  T
Q  605 aatgttgaactgcatgtttggcctgtgcttgcccaagtcaagaacagcaagatttccccctatttcccaccaaatctgccccaaattcatcaaaatgatc 704  Q
    ||||||||||||||||||||||||||||||||||||||||||||||     | |||||||||||||||||||||||||||||||||||||||||||||||    
T  12802 aatgttgaactgcatgtttggcctgtgcttgcccaagtcaagaaca-----acttccccctatttcccaccaaatctgccccaaattcatcaaaatgatc 12708  T
Q  705 cgaatttatcnnnnnnnnttgatgaaagcagctcaaattgatgaatttggggcagatttgggg 767  Q
    |||||| |||        |||||||||||| ||||||||||||||||||||||||||||||||    
T  12707 cgaattcatcaaaaaaaattgatgaaagcaactcaaattgatgaatttggggcagatttgggg 12645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #2
Raw Score: 581; E-Value: 0
Query Start/End: Original strand, 170 - 844
Target Start/End: Original strand, 54783 - 55457
Alignment:
Q  170 gcaaatgctagtcgccccgcagcgttacaagggcacaagtttttccgaggagggaccaacacggctatgtttattgacctgcactgcgtaagcaaatgct 269  Q
    |||| |||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54783 gcaagtgctagtcgccccgcaccgttacaagggcacaattttttccgaggagggaccaacacggctatgtttattgacctgcactgcgtaagcaaatgct 54882  T
Q  270 agtcgccccgcagcgttacaagggcacaagtttttccgagaagggacgtgcacgggtttcttactagctacgctagccgccccaccgtacatgggcggcg 369  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54883 agtcgccccgcagcgttacaagggcacaagtttttccgagaagggacgtgcacgggtttcttactagctacgctagccgccccaccgtacatgggcggcg 54982  T
Q  370 tgagaaagagggagaaattttgctttaccgtgaccaagacagagtttggccaagacgaggcatgaacaaacattgaactgcatgcttggcctgtgcctgc 469  Q
    ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |||||||||||||||    
T  54983 tgagaaagaggcagaaattttgctttaccgtgaccaagacagtgtttggccaagacgaggcatgaacaaacgttgaactgcatgtttggcctgtgcctgc 55082  T
Q  470 ccaagtcacgagcggcaagacgaccccctctttcccacgctgggtggctgggcctttccgacgggacgtggaaaatatgaatcaatcctactcttccatg 569  Q
    ||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  55083 ccaagtcacgaacggcaagacgaccccctctttcccacgct-ggtggctgggcc-ttccgacgggacgtggaaaatatgaatcaatcctactcttccatg 55180  T
Q  570 acaacaacaaag-ttggccaagacgaggcatgaacaaatgttgaactgcatgtttggcctgtgcttgccc-aagtcaagaacagcaagatttccccctat 667  Q
    ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  55181 acaacgacaaagtttggccaagacgaggcatgaacaaatgttgaactgcatgtttggcctgtgcttgcccaaagtcaagaacagcaagatttccccctat 55280  T
Q  668 ttcccaccaaatctgccccaaattcatcaaaatgatccgaatttatcnnnnnnnnttgatgaaagcagctcaaattgatgaatttggggcagatttgggg 767  Q
    |||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||    
T  55281 ttcccaccaaatctgccccaaattcatcaaaatgatccgaatttatcaaaatcttttgatgaaagcagctcaaattgatgaatttggggcagatttgggg 55380  T
Q  768 ggagcagcttgttttttggtggctgggggctgcctgggcgcgccccagacagtcccccagccatgcccagccatgcc 844  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  55381 ggagcagcttgttttttggtggctgggggctgcctgggcgcgccccatacagtcccccagccatgcccagccatgcc 55457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #3
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 170 - 714
Target Start/End: Original strand, 68426 - 68970
Alignment:
Q  170 gcaaatgctagtcgccccgcagcgttacaagggcacaagtttttccgaggagggaccaacacggctatgtttattgacctgcactgcgtaagcaaatgct 269  Q
    |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  68426 gcaagtgctagtcgccccgcagcgttacaagggcacaattttttccgaggagggaccaacacggctatgtttattgacctgcactgcgtaagcaaatgct 68525  T
Q  270 agtcgccccgcagcgttacaagggcacaagtttttccgagaagggacgtgcacgggtttcttactagctacgctagccgccccaccgtacatgggcggcg 369  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  68526 agtcgccccgcagcgttacaagggcacaagtttttccgagaagggacgtgcacgggtttcttactagctacgctagccgccccaccgtacatgggcggcg 68625  T
Q  370 tgagaaagagggagaaattttgctttaccgtgaccaagacagagtttggccaagacgaggcatgaacaaacattgaactgcatgcttggcctgtgcctgc 469  Q
    ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |||||||||||||||    
T  68626 tgagaaagaggcagaaattttgctttaccgtgaccaagacagtgtttggccaagacgaggcatgaacaaacgttgaactgcatgtttggcctgtgcctgc 68725  T
Q  470 ccaagtcacgagcggcaagacgaccccctctttcccacgctgggtggctgggcctttccgacgggacgtggaaaatatgaatcaatcctactcttccatg 569  Q
    ||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  68726 ccaagtcacgaacggcaagacgaccccctctttcccacgct-ggtggctgggcc-ttccgacgggacgtggaaaatatgaatcaatcctactcttccatg 68823  T
Q  570 acaacaacaaag-ttggccaagacgaggcatgaacaaatgttgaactgcatgtttggcctgtgcttgccc-aagtcaagaacagcaagatttccccctat 667  Q
    ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  68824 acaacgacaaagtttggccaagacgaggcatgaacaaatgttgaactgcatgtttggcctgtgcttgcccaaagtcaagaacagcaagatttccccctat 68923  T
Q  668 ttcccaccaaatctgccccaaattcatcaaaatgatccgaatttatc 714  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  68924 ttcccaccaaatctgccccaaattcatcaaaatgatccgaatttatc 68970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #4
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 170 - 432
Target Start/End: Original strand, 33716 - 33980
Alignment:
Q  170 gcaaatgctagtcgccccgcagcgttacaagggcacaagtttttccgaggagggaccaacacggctatgtttattgacctgcactgc--gtaagcaaatg 267  Q
    |||| ||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||| ||||||||||||||||||||||||  ||||| |||||    
T  33716 gcaagtgctagtcgccccgcagcgttacaagggcacaattatttgcgaggagggaccaacacagctatgtttattgacctgcactgctggtaagaaaatg 33815  T
Q  268 ctagtcgccccgcagcgttacaagggcacaagtttttccgagaagggacgtgcacgggtttcttactagctacgctagccgccccaccgtacatgggcgg 367  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33816 ctagtcgccccgcagcgttacaagggcacaagtttttccgagaagggacgtgcacgggtttcttactagctacgctagccgccccaccgtacatgggcgg 33915  T
Q  368 cgtgagaaagagggagaaattttgctttaccgtgaccaagacagagtttggccaagacgaggcat 432  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  33916 cgtgagaaagagggagaaattttgctttaccgtgaccaagacagtgtttggccaagacgaggcat 33980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #5
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 170 - 387
Target Start/End: Original strand, 52890 - 53107
Alignment:
Q  170 gcaaatgctagtcgccccgcagcgttacaagggcacaagtttttccgaggagggaccaacacggctatgtttattgacctgcactgcgtaagcaaatgct 269  Q
    |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52890 gcaagtgctagtcgccccgcagcgttacaagggcacaattttttccgaggagggaccaacacggctatgtttattgacctgcactgcgtaagcaaatgct 52989  T
Q  270 agtcgccccgcagcgttacaagggcacaagtttttccgagaagggacgtgcacgggtttcttactagctacgctagccgccccaccgtacatgggcggcg 369  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52990 agtcgccccgcagcgttacaagggcacaagtttttccgagaagggacgtgcacgggtttcttactagctacgctagccgccccaccgtacatgggcggcg 53089  T
Q  370 tgagaaagagggagaaat 387  Q
    ||||||||||| ||||||    
T  53090 tgagaaagaggcagaaat 53107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #6
Raw Score: 185; E-Value: 1e-99
Query Start/End: Original strand, 6 - 225
Target Start/End: Original strand, 52819 - 53036
Alignment:
Q  6 caactcaaacacgacaaagattaagaggacgtgagtcaacccaaattcaatgccacgagagagtttcgtatgcaagtgctagtcgccccgcagcgttaca 105  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  52819 caactcaaacacggcaaagattaagaggacgtgagtcaacccaaattcaatgccacgagagagttttgtatgcaagtgctagtcgccccgcagcgttaca 52918  T
Q  106 agggcacgattatttccgaggagggaccaacacggctatgtttattgaccagcactgcaagtaagcaaatgctagtcgccccgcagcgttacaagggcac 205  Q
    ||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||  ||||||||||||||||||||||||||||||||||||||||    
T  52919 agggcacaattttttccgaggagggaccaacacggctatgtttattgacctgcactgc--gtaagcaaatgctagtcgccccgcagcgttacaagggcac 53016  T
Q  206 aagtttttccgaggagggac 225  Q
    ||||||||||||| ||||||    
T  53017 aagtttttccgagaagggac 53036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #7
Raw Score: 185; E-Value: 1e-99
Query Start/End: Original strand, 6 - 225
Target Start/End: Original strand, 68355 - 68572
Alignment:
Q  6 caactcaaacacgacaaagattaagaggacgtgagtcaacccaaattcaatgccacgagagagtttcgtatgcaagtgctagtcgccccgcagcgttaca 105  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  68355 caactcaaacacggcaaagattaagaggacgtgagtcaacccaaattcaatgccacgagagagttttgtatgcaagtgctagtcgccccgcagcgttaca 68454  T
Q  106 agggcacgattatttccgaggagggaccaacacggctatgtttattgaccagcactgcaagtaagcaaatgctagtcgccccgcagcgttacaagggcac 205  Q
    ||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||  ||||||||||||||||||||||||||||||||||||||||    
T  68455 agggcacaattttttccgaggagggaccaacacggctatgtttattgacctgcactgc--gtaagcaaatgctagtcgccccgcagcgttacaagggcac 68552  T
Q  206 aagtttttccgaggagggac 225  Q
    ||||||||||||| ||||||    
T  68553 aagtttttccgagaagggac 68572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #8
Raw Score: 180; E-Value: 9e-97
Query Start/End: Original strand, 6 - 225
Target Start/End: Original strand, 33645 - 33864
Alignment:
Q  6 caactcaaacacgacaaagattaagaggacgtgagtcaacccaaattcaatgccacgagagagtttcgtatgcaagtgctagtcgccccgcagcgttaca 105  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  33645 caactcaaacacaacaaagattaagaggacgtgagtcaacccaaattcaatgccacgagagagttttgtatgcaagtgctagtcgccccgcagcgttaca 33744  T
Q  106 agggcacgattatttccgaggagggaccaacacggctatgtttattgaccagcactgcaagtaagcaaatgctagtcgccccgcagcgttacaagggcac 205  Q
    ||||||| ||||||| ||||||||||||||||| |||||||||||||||| |||||||  ||||| ||||||||||||||||||||||||||||||||||    
T  33745 agggcacaattatttgcgaggagggaccaacacagctatgtttattgacctgcactgctggtaagaaaatgctagtcgccccgcagcgttacaagggcac 33844  T
Q  206 aagtttttccgaggagggac 225  Q
    ||||||||||||| ||||||    
T  33845 aagtttttccgagaagggac 33864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #9
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 20 - 225
Target Start/End: Original strand, 54726 - 54929
Alignment:
Q  20 caaagattaagaggacgtgagtcaacccaaattcaatgccacgagagagtttcgtatgcaagtgctagtcgccccgcagcgttacaagggcacgattatt 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| ||| ||    
T  54726 caaagattaagaggacgtgagtcaacccaaattcaatgccacgagagagttttgtatgcaagtgctagtcgccccgcaccgttacaagggcacaattttt 54825  T
Q  120 tccgaggagggaccaacacggctatgtttattgaccagcactgcaagtaagcaaatgctagtcgccccgcagcgttacaagggcacaagtttttccgagg 219  Q
    |||||||||||||||||||||||||||||||||||| |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  54826 tccgaggagggaccaacacggctatgtttattgacctgcactgc--gtaagcaaatgctagtcgccccgcagcgttacaagggcacaagtttttccgaga 54923  T
Q  220 agggac 225  Q
    ||||||    
T  54924 agggac 54929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #10
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 41 - 256
Target Start/End: Complemental strand, 13622 - 13407
Alignment:
Q  41 tcaacccaaattcaatgccacgagagagtttcgtatgcaagtgctagtcgccccgcagcgttacaagggcacgattatttccgaggagggaccaacacgg 140  Q
    ||||||||||||||||||||||| |||||||||||||||| |||| ||||||| ||| |||||||||||||| ||| |||||||  ||||||||||||||    
T  13622 tcaacccaaattcaatgccacgaaagagtttcgtatgcaaatgctggtcgccctgcatcgttacaagggcacaattttttccgataagggaccaacacgg 13523  T
Q  141 ctatgtttattgaccagcactgcaagtaagcaaatgctagtcgccccgcagcgttacaagggcacaagtttttccgaggagggaccaacacggctatgtt 240  Q
    ||||||||||||||| |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  13522 ctatgtttattgacctgcactgcctgtaagcaaatgctagtcgccccgcagcgttacaagggcacaagtttttccgagaagggaccaacacggctatgtt 13423  T
Q  241 tattgacctgcactgc 256  Q
    ||||||||||||||||    
T  13422 tattgacctgcactgc 13407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #11
Raw Score: 118; E-Value: 9e-60
Query Start/End: Original strand, 691 - 835
Target Start/End: Original strand, 42600 - 42744
Alignment:
Q  691 tcatcaaaatgatccgaatttatcnnnnnnnnttgatgaaagcagctcaaattgatgaatttggggcagatttggggggagcagcttgttttttggtggc 790  Q
    ||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42600 tcatcaaaatgatccgaatttatcaaaatcctttgatgaaagcagctcaaattgatgaatttggggcagatttggggggagcagcttgttttttggtggc 42699  T
Q  791 tgggggctgcctgggcgcgccccagacagtcccccagccatgccc 835  Q
    ||||||||| |||||||||||||||||||||||||||||||||||    
T  42700 tgggggctgnctgggcgcgccccagacagtcccccagccatgccc 42744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #12
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 170 - 316
Target Start/End: Complemental strand, 13586 - 13438
Alignment:
Q  170 gcaaatgctagtcgccccgcagcgttacaagggcacaagtttttccgaggagggaccaacacggctatgtttattgacctgcactgc--gtaagcaaatg 267  Q
    ||||||||| ||||||| ||| |||||||||||||||| |||||||||  |||||||||||||||||||||||||||||||||||||  |||||||||||    
T  13586 gcaaatgctggtcgccctgcatcgttacaagggcacaattttttccgataagggaccaacacggctatgtttattgacctgcactgcctgtaagcaaatg 13487  T
Q  268 ctagtcgccccgcagcgttacaagggcacaagtttttccgagaagggac 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  13486 ctagtcgccccgcagcgttacaagggcacaagtttttccgagaagggac 13438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #13
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 6 - 146
Target Start/End: Original strand, 71275 - 71417
Alignment:
Q  6 caactcaaacacgacaaagattaagaggacgtgagtcaacccaaa-ttcaatgccacgagagagtttcgtatgcaagtgctagtcgccccgcagcgttac 104  Q
    ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  71275 caactcaaacacggcaaagattaagaggacgtgagtcaacccaaaattcaatgccacgagagagttttgtatgcaagtgctagtcgccccgcagcgttac 71374  T
Q  105 aagggcacgattatttccgaggagggaccaaca-cggctatgt 146  Q
    |||||||| ||| |||||||||||||||||||| |||||||||    
T  71375 aagggcacaattttttccgaggagggaccaacaccggctatgt 71417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #14
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 621 - 774
Target Start/End: Complemental strand, 12099 - 11946
Alignment:
Q  621 tttggcctgtgcttgcccaagtcaagaacagcaagatttccccctatttcccaccaaatctgccccaaattcatcaaaatgatccgaatttatcnnnnnn 720  Q
    |||||||||||  |||||| | ||||||| ||||||||||||||   |||||||||||||| ||||||||||||||||| ||||| |||||||           
T  12099 tttggcctgtggctgcccaggccaagaacggcaagatttcccccacattcccaccaaatctcccccaaattcatcaaaaagatcccaatttattaaaaaa 12000  T
Q  721 nnttgatgaaagcagctcaaattgatgaatttggggcagatttggggggagcag 774  Q
      |||||||||||||||||||||||||||  |||| ||||||||||||||||||    
T  11999 atttgatgaaagcagctcaaattgatgaaaatgggacagatttggggggagcag 11946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #15
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 621 - 772
Target Start/End: Original strand, 34822 - 34972
Alignment:
Q  621 tttggcctgtgcttgcccaagtcaagaacagcaagatttccccctatttcccaccaaatctgccccaaattcatcaaaatgatccgaatttatcnnnnnn 720  Q
    |||||||||||  ||| || | ||||||| ||||||||||||||  ||||||||||||||| || |||||||||||||| ||||| ||||||||          
T  34822 tttggcctgtggctgcacaggccaagaacggcaagatttcccccactttcccaccaaatctcccacaaattcatcaaaa-gatcccaatttatcaaaaaa 34920  T
Q  721 nnttgatgaaagcagctcaaattgatgaatttggggcagatttggggggagc 772  Q
      |||||||||||||||||||||||||||  |||||||||||||||||||||    
T  34921 atttgatgaaagcagctcaaattgatgaaaatggggcagatttggggggagc 34972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #16
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 77 - 165
Target Start/End: Complemental strand, 13493 - 13405
Alignment:
Q  77 gcaagtgctagtcgccccgcagcgttacaagggcacgattatttccgaggagggaccaacacggctatgtttattgaccagcactgcaa 165  Q
    |||| ||||||||||||||||||||||||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||||||    
T  13493 gcaaatgctagtcgccccgcagcgttacaagggcacaagtttttccgagaagggaccaacacggctatgtttattgacctgcactgcaa 13405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #17
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 170 - 239
Target Start/End: Original strand, 71347 - 71417
Alignment:
Q  170 gcaaatgctagtcgccccgcagcgttacaagggcacaagtttttccgaggagggaccaaca-cggctatgt 239  Q
    |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||    
T  71347 gcaagtgctagtcgccccgcagcgttacaagggcacaattttttccgaggagggaccaacaccggctatgt 71417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #18
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 202 - 256
Target Start/End: Original strand, 54653 - 54707
Alignment:
Q  202 gcacaagtttttccgaggagggaccaacacggctatgtttattgacctgcactgc 256  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  54653 gcacaagtttttccgagaagggaccaacacggctatgtttattgacctgcactgc 54707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #19
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 202 - 256
Target Start/End: Original strand, 68296 - 68350
Alignment:
Q  202 gcacaagtttttccgaggagggaccaacacggctatgtttattgacctgcactgc 256  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  68296 gcacaagtttttccgagaagggaccaacacggctatgtttattgacctgcactgc 68350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #20
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 202 - 256
Target Start/End: Original strand, 71216 - 71270
Alignment:
Q  202 gcacaagtttttccgaggagggaccaacacggctatgtttattgacctgcactgc 256  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  71216 gcacaagtttttccgagaagggaccaacacggctatgtttattgacctgcactgc 71270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #21
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 621 - 714
Target Start/End: Complemental strand, 19406 - 19314
Alignment:
Q  621 tttggcctgtgcttgcccaagtcaagaacagcaagatttccccctatttcccaccaaatctgccccaaattcatcaaaatgatccgaatttatc 714  Q
    |||||||||||  |||||| | ||||||| ||||||||||||||  ||||||||||||||| ||||||||||||||||| ||||| ||||||||    
T  19406 tttggcctgtggctgcccaggccaagaacggcaagatttcccccactttcccaccaaatctcccccaaattcatcaaaa-gatcccaatttatc 19314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #22
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 621 - 714
Target Start/End: Original strand, 43612 - 43704
Alignment:
Q  621 tttggcctgtgcttgcccaagtcaagaacagcaagatttccccctatttcccaccaaatctgccccaaattcatcaaaatgatccgaatttatc 714  Q
    |||||||||||  |||||| | ||||||| ||||||||||||||  ||||||||||||||| ||||||||||||||||| ||||| ||||||||    
T  43612 tttggcctgtggctgcccaggccaagaacggcaagatttcccccactttcccaccaaatctcccccaaattcatcaaaa-gatcccaatttatc 43704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #23
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 621 - 714
Target Start/End: Original strand, 56327 - 56419
Alignment:
Q  621 tttggcctgtgcttgcccaagtcaagaacagcaagatttccccctatttcccaccaaatctgccccaaattcatcaaaatgatccgaatttatc 714  Q
    |||||||||||  |||||| | ||||||| ||||||||||||||  ||||||||||||||| ||||||||||||||||| ||||| ||||||||    
T  56327 tttggcctgtggctgcccaggccaagaacggcaagatttcccccactttcccaccaaatctcccccaaattcatcaaaa-gatcccaatttatc 56419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #24
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 621 - 714
Target Start/End: Original strand, 74999 - 75091
Alignment:
Q  621 tttggcctgtgcttgcccaagtcaagaacagcaagatttccccctatttcccaccaaatctgccccaaattcatcaaaatgatccgaatttatc 714  Q
    |||||||||||  |||||| | ||||||| ||||||||||||||  ||||||||||||||| ||||||||||||||||| ||||| ||||||||    
T  74999 tttggcctgtggctgcccaggccaagaacggcaagatttcccccactttcccaccaaatctcccccaaattcatcaaaa-gatcccaatttatc 75091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #25
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 202 - 256
Target Start/End: Complemental strand, 13685 - 13631
Alignment:
Q  202 gcacaagtttttccgaggagggaccaacacggctatgtttattgacctgcactgc 256  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||    
T  13685 gcacaagtttttccgagaagggaccaacacggctatgtttattgaccagcactgc 13631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #26
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 202 - 256
Target Start/End: Original strand, 52760 - 52814
Alignment:
Q  202 gcacaagtttttccgaggagggaccaacacggctatgtttattgacctgcactgc 256  Q
    ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  52760 gcacaagttttcccgagaagggaccaacacggctatgtttattgacctgcactgc 52814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #27
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 723 - 780
Target Start/End: Complemental strand, 3968 - 3911
Alignment:
Q  723 ttgatgaaagcagctcaaattgatgaatttggggcagatttggggggagcagcttgtt 780  Q
    |||||||||||||||||||||||||||  |||||||||||||||||||||||| ||||    
T  3968 ttgatgaaagcagctcaaattgatgaaaatggggcagatttggggggagcagcctgtt 3911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #28
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 118 - 165
Target Start/End: Complemental strand, 13676 - 13629
Alignment:
Q  118 tttccgaggagggaccaacacggctatgtttattgaccagcactgcaa 165  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||    
T  13676 tttccgagaagggaccaacacggctatgtttattgaccagcactgcaa 13629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #29
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 261 - 316
Target Start/End: Original strand, 71347 - 71402
Alignment:
Q  261 gcaaatgctagtcgccccgcagcgttacaagggcacaagtttttccgagaagggac 316  Q
    |||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||    
T  71347 gcaagtgctagtcgccccgcagcgttacaagggcacaattttttccgaggagggac 71402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #30
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 621 - 714
Target Start/End: Original strand, 35939 - 36031
Alignment:
Q  621 tttggcctgtgcttgcccaagtcaagaacagcaagatttccccctatttcccaccaaatctgccccaaattcatcaaaatgatccgaatttatc 714  Q
    |||||||||||  ||| || | ||||||| ||||||||||||||  ||||||||||||||| || |||||||||||||| ||||| ||||||||    
T  35939 tttggcctgtggctgcacaggccaagaacggcaagatttcccccactttcccaccaaatctcccacaaattcatcaaaa-gatcccaatttatc 36031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #31
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 202 - 254
Target Start/End: Original strand, 33586 - 33638
Alignment:
Q  202 gcacaagtttttccgaggagggaccaacacggctatgtttattgacctgcact 254  Q
    |||||||| |||||||| |||||||||||||||||||||||||||||| ||||    
T  33586 gcacaagtgtttccgagaagggaccaacacggctatgtttattgacctacact 33638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #32
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 118 - 165
Target Start/End: Original strand, 54662 - 54709
Alignment:
Q  118 tttccgaggagggaccaacacggctatgtttattgaccagcactgcaa 165  Q
    |||||||| ||||||||||||||||||||||||||||| |||||||||    
T  54662 tttccgagaagggaccaacacggctatgtttattgacctgcactgcaa 54709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #33
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 118 - 165
Target Start/End: Original strand, 68305 - 68352
Alignment:
Q  118 tttccgaggagggaccaacacggctatgtttattgaccagcactgcaa 165  Q
    |||||||| ||||||||||||||||||||||||||||| |||||||||    
T  68305 tttccgagaagggaccaacacggctatgtttattgacctgcactgcaa 68352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #34
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 118 - 165
Target Start/End: Original strand, 71225 - 71272
Alignment:
Q  118 tttccgaggagggaccaacacggctatgtttattgaccagcactgcaa 165  Q
    |||||||| ||||||||||||||||||||||||||||| |||||||||    
T  71225 tttccgagaagggaccaacacggctatgtttattgacctgcactgcaa 71272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #35
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 256 - 316
Target Start/End: Complemental strand, 13591 - 13531
Alignment:
Q  256 cgtaagcaaatgctagtcgccccgcagcgttacaagggcacaagtttttccgagaagggac 316  Q
    |||| ||||||||| ||||||| ||| |||||||||||||||| ||||||||| |||||||    
T  13591 cgtatgcaaatgctggtcgccctgcatcgttacaagggcacaattttttccgataagggac 13531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #36
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 165
Target Start/End: Original strand, 52772 - 52816
Alignment:
Q  121 ccgaggagggaccaacacggctatgtttattgaccagcactgcaa 165  Q
    ||||| ||||||||||||||||||||||||||||| |||||||||    
T  52772 ccgagaagggaccaacacggctatgtttattgacctgcactgcaa 52816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #37
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 155
Target Start/End: Original strand, 33595 - 33632
Alignment:
Q  118 tttccgaggagggaccaacacggctatgtttattgacc 155  Q
    |||||||| |||||||||||||||||||||||||||||    
T  33595 tttccgagaagggaccaacacggctatgtttattgacc 33632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052 (Bit Score: 651; Significance: 0; HSPs: 34)
Name: scaffold0052
Description:

Target: scaffold0052; HSP #1
Raw Score: 651; E-Value: 0
Query Start/End: Original strand, 6 - 767
Target Start/End: Original strand, 71133 - 71890
Alignment:
Q  6 caactcaaacacgacaaagattaagaggacgtgagtcaacccaaattcaatgccacgagagagtttcgtatgcaagtgctagtcgccccgcagcgttaca 105  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  71133 caactcaaacacgacaaagattaagaggacgtgagtcaacctaaattcaatgccacgagagagtttcgtatgcaagtgctggtcgccccgcagcgttaca 71232  T
Q  106 agggcacgattatttccgaggagggaccaacacggctatgtttattgaccagcactgcaagtaagcaaatgctagtcgccccgcagcgttacaagggcac 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  71233 agggcacgattatttccgaggagggaccaacacggctatgtttattgaccagcactgtaagtaagcaaatgctcgtcgccccgcagcgttacaagggcac 71332  T
Q  206 aagtttttccgaggagggaccaacacggctatgtttattgacctgcactgcgtaagcaaatgctagtcgccccgcagcgttacaagggcacaagtttttc 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  71333 aagtttttccgaggagggaccaacacggctatgtttattgacctgcactacgtaagcaaatgctagtcgccccgcagcgttacaagggcacaagtttttc 71432  T
Q  306 cgagaagggacgtgcacgggtttcttactagctacgctagccgccccaccgtacatgggcggcgtgagaaagagggagaaattttgctttaccgtgacca 405  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||    
T  71433 cgagaagggacgtgcacgggtttcttactagctacgctagccgccccaccgtacatcggcggcgtgggaaagagggagaaattttgctttaccgtgacca 71532  T
Q  406 agacagagtttggccaagacgaggcatgaacaaacattgaactgcatgcttggcctgtgcctgcccaagtcacgagcggcaagacgaccccctctttccc 505  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||    
T  71533 agacagagtttggccaagacgaggcatgaacaaacgttgaactgcatgcttggcttgtgcctgcccaactcacgagcggcaagacgaccccctctttccc 71632  T
Q  506 acgctgggtggctgggcctttccgacgggacgtggaaaatatgaatcaatcctactcttccatgacaacaacaaag-ttggccaagacgaggcatgaaca 604  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||    
T  71633 acgctgggtggctaggcctttccgacgggacgtggaaaatatgaatcaatcctactcttccatgacaacgacaaagtttggccaagacgaggcatgaaca 71732  T
Q  605 aatgttgaactgcatgtttggcctgtgcttgcccaagtcaagaacagcaagatttccccctatttcccaccaaatctgccccaaattcatcaaaatgatc 704  Q
    ||||||||||||||||||||||||||||||||||||||||||||||     | |||||||||||||||||||||||||||||||||||||||||||||||    
T  71733 aatgttgaactgcatgtttggcctgtgcttgcccaagtcaagaaca-----acttccccctatttcccaccaaatctgccccaaattcatcaaaatgatc 71827  T
Q  705 cgaatttatcnnnnnnnnttgatgaaagcagctcaaattgatgaatttggggcagatttgggg 767  Q
    |||||| |||        |||||||||||| ||||||||||||||||||||||||||||||||    
T  71828 cgaattcatcaaaaaaaattgatgaaagcaactcaaattgatgaatttggggcagatttgggg 71890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #2
Raw Score: 581; E-Value: 0
Query Start/End: Original strand, 170 - 844
Target Start/End: Original strand, 52389 - 53063
Alignment:
Q  170 gcaaatgctagtcgccccgcagcgttacaagggcacaagtttttccgaggagggaccaacacggctatgtttattgacctgcactgcgtaagcaaatgct 269  Q
    |||| |||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52389 gcaagtgctagtcgccccgcaccgttacaagggcacaattttttccgaggagggaccaacacggctatgtttattgacctgcactgcgtaagcaaatgct 52488  T
Q  270 agtcgccccgcagcgttacaagggcacaagtttttccgagaagggacgtgcacgggtttcttactagctacgctagccgccccaccgtacatgggcggcg 369  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52489 agtcgccccgcagcgttacaagggcacaagtttttccgagaagggacgtgcacgggtttcttactagctacgctagccgccccaccgtacatgggcggcg 52588  T
Q  370 tgagaaagagggagaaattttgctttaccgtgaccaagacagagtttggccaagacgaggcatgaacaaacattgaactgcatgcttggcctgtgcctgc 469  Q
    ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |||||||||||||||    
T  52589 tgagaaagaggcagaaattttgctttaccgtgaccaagacagtgtttggccaagacgaggcatgaacaaacgttgaactgcatgtttggcctgtgcctgc 52688  T
Q  470 ccaagtcacgagcggcaagacgaccccctctttcccacgctgggtggctgggcctttccgacgggacgtggaaaatatgaatcaatcctactcttccatg 569  Q
    ||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  52689 ccaagtcacgaacggcaagacgaccccctctttcccacgct-ggtggctgggcc-ttccgacgggacgtggaaaatatgaatcaatcctactcttccatg 52786  T
Q  570 acaacaacaaag-ttggccaagacgaggcatgaacaaatgttgaactgcatgtttggcctgtgcttgccc-aagtcaagaacagcaagatttccccctat 667  Q
    ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  52787 acaacgacaaagtttggccaagacgaggcatgaacaaatgttgaactgcatgtttggcctgtgcttgcccaaagtcaagaacagcaagatttccccctat 52886  T
Q  668 ttcccaccaaatctgccccaaattcatcaaaatgatccgaatttatcnnnnnnnnttgatgaaagcagctcaaattgatgaatttggggcagatttgggg 767  Q
    |||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||    
T  52887 ttcccaccaaatctgccccaaattcatcaaaatgatccgaatttatcaaaatcttttgatgaaagcagctcaaattgatgaatttggggcagatttgggg 52986  T
Q  768 ggagcagcttgttttttggtggctgggggctgcctgggcgcgccccagacagtcccccagccatgcccagccatgcc 844  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  52987 ggagcagcttgttttttggtggctgggggctgcctgggcgcgccccatacagtcccccagccatgcccagccatgcc 53063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #3
Raw Score: 580; E-Value: 0
Query Start/End: Original strand, 170 - 835
Target Start/End: Original strand, 29190 - 29855
Alignment:
Q  170 gcaaatgctagtcgccccgcagcgttacaagggcacaagtttttccgaggagggaccaacacggctatgtttattgacctgcactgcgtaagcaaatgct 269  Q
    |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29190 gcaagtgctagtcgccccgcagcgttacaagggcacaattttttccgaggagggaccaacacggctatgtttattgacctgcactgcgtaagcaaatgct 29289  T
Q  270 agtcgccccgcagcgttacaagggcacaagtttttccgagaagggacgtgcacgggtttcttactagctacgctagccgccccaccgtacatgggcggcg 369  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29290 agtcgccccgcagcgttacaagggcacaagtttttccgagaagggacgtgcacgggtttcttactagctacgctagccgccccaccgtacatgggcggcg 29389  T
Q  370 tgagaaagagggagaaattttgctttaccgtgaccaagacagagtttggccaagacgaggcatgaacaaacattgaactgcatgcttggcctgtgcctgc 469  Q
    ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |||||||||||||||    
T  29390 tgagaaagaggcagaaattttgctttaccgtgaccaagacagtgtttggccaagacgaggcatgaacaaacgttgaactgcatgtttggcctgtgcctgc 29489  T
Q  470 ccaagtcacgagcggcaagacgaccccctctttcccacgctgggtggctgggcctttccgacgggacgtggaaaatatgaatcaatcctactcttccatg 569  Q
    ||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  29490 ccaagtcacgaacggcaagacgaccccctctttcccacgct-ggtggctgggcc-ttccgacgggacgtggaaaatatgaatcaatcctactcttccatg 29587  T
Q  570 acaacaacaaag-ttggccaagacgaggcatgaacaaatgttgaactgcatgtttggcctgtgcttgccc-aagtcaagaacagcaagatttccccctat 667  Q
    ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  29588 acaacgacaaagtttggccaagacgaggcatgaacaaatgttgaactgcatgtttggcctgtgcttgcccaaagtcaagaacagcaagatttccccctat 29687  T
Q  668 ttcccaccaaatctgccccaaattcatcaaaatgatccgaatttatcnnnnnnnnttgatgaaagcagctcaaattgatgaatttggggcagatttgggg 767  Q
    |||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||    
T  29688 ttcccaccaaatctgccccaaattcatcaaaatgatccgaatttatcaaaatcctttgatgaaagcagctcaaattgatgaatttggggcagatttgggg 29787  T
Q  768 ggagcagcttgttttttggtggctgggggctgcctgggcgcgccccagacagtcccccagccatgccc 835  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29788 ggagcagcttgttttttggtggctgggggctgcctgggcgcgccccagacagtcccccagccatgccc 29855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #4
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 170 - 714
Target Start/End: Original strand, 49798 - 50342
Alignment:
Q  170 gcaaatgctagtcgccccgcagcgttacaagggcacaagtttttccgaggagggaccaacacggctatgtttattgacctgcactgcgtaagcaaatgct 269  Q
    |||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49798 gcaagtgctagtcgccccgcagcgttacaagggcacaattttttctgaggagggaccaacacggctatgtttattgacctgcactgcgtaagcaaatgct 49897  T
Q  270 agtcgccccgcagcgttacaagggcacaagtttttccgagaagggacgtgcacgggtttcttactagctacgctagccgccccaccgtacatgggcggcg 369  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49898 agtcgccccgcagcgttacaagggcacaagtttttccgagaagggacgtgcacgggtttcttactagctacgctagccgccccaccgtacatgggcggcg 49997  T
Q  370 tgagaaagagggagaaattttgctttaccgtgaccaagacagagtttggccaagacgaggcatgaacaaacattgaactgcatgcttggcctgtgcctgc 469  Q
    ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |||||||||||||||    
T  49998 tgagaaagaggcagaaattttgctttaccgtgaccaagacagtgtttggccaagacgaggcatgaacaaacgttgaactgcatgtttggcctgtgcctgc 50097  T
Q  470 ccaagtcacgagcggcaagacgaccccctctttcccacgctgggtggctgggcctttccgacgggacgtggaaaatatgaatcaatcctactcttccatg 569  Q
    ||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  50098 ccaagtcacgaacggcaagacgaccccctctttcccacgct-ggtggctgggcc-ttccgacgggacgtggaaaatatgaatcaatcctactcttccatg 50195  T
Q  570 acaacaacaaag-ttggccaagacgaggcatgaacaaatgttgaactgcatgtttggcctgtgcttgccc-aagtcaagaacagcaagatttccccctat 667  Q
    ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  50196 acaacgacaaagtttggccaagacgaggcatgaacaaatgttgaactgcatgtttggcctgtgcttgcccaaagtcaagaacagcaagatttccccctat 50295  T
Q  668 ttcccaccaaatctgccccaaattcatcaaaatgatccgaatttatc 714  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  50296 ttcccaccaaatctgccccaaattcatcaaaatgatccgaatttatc 50342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #5
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 170 - 432
Target Start/End: Complemental strand, 62348 - 62084
Alignment:
Q  170 gcaaatgctagtcgccccgcagcgttacaagggcacaagtttttccgaggagggaccaacacggctatgtttattgacctgcactgc--gtaagcaaatg 267  Q
    |||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||  ||||| |||||    
T  62348 gcaagtgctagtcgccccgcagcgttacaagggcacaattatttccgaggagggaccaacacagctatgtttattgacctgcactgctggtaagaaaatg 62249  T
Q  268 ctagtcgccccgcagcgttacaagggcacaagtttttccgagaagggacgtgcacgggtttcttactagctacgctagccgccccaccgtacatgggcgg 367  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  62248 ctagtcgccccgcagcgttacaagggcacaagtttttccgagaagggacgtgcacgggtttcttactagctacgctagccgccccaccgtacatgggcgg 62149  T
Q  368 cgtgagaaagagggagaaattttgctttaccgtgaccaagacagagtttggccaagacgaggcat 432  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  62148 cgtgagaaagagggagaaattttgctttaccgtgaccaagacagtgtttggccaagacgaggcat 62084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #6
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 170 - 379
Target Start/End: Original strand, 19918 - 20127
Alignment:
Q  170 gcaaatgctagtcgccccgcagcgttacaagggcacaagtttttccgaggagggaccaacacggctatgtttattgacctgcactgcgtaagcaaatgct 269  Q
    |||| |||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19918 gcaagtgctagtcgccccgcaccgttacaagggcacaattttttccgaggagggaccaacacggctatgtttattgacctgcactgcgtaagcaaatgct 20017  T
Q  270 agtcgccccgcagcgttacaagggcacaagtttttccgagaagggacgtgcacgggtttcttactagctacgctagccgccccaccgtacatgggcggcg 369  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20018 agtcgccccgcagcgttacaagggcacaagtttttccgagaagggacgtgcacgggtttcttactagctacgctagccgccccaccgtacatgggcggcg 20117  T
Q  370 tgagaaagag 379  Q
    ||||||||||    
T  20118 tgagaaagag 20127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #7
Raw Score: 185; E-Value: 1e-99
Query Start/End: Original strand, 6 - 225
Target Start/End: Original strand, 29119 - 29336
Alignment:
Q  6 caactcaaacacgacaaagattaagaggacgtgagtcaacccaaattcaatgccacgagagagtttcgtatgcaagtgctagtcgccccgcagcgttaca 105  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  29119 caactcaaacacggcaaagattaagaggacgtgagtcaacccaaattcaatgccacgagagagttttgtatgcaagtgctagtcgccccgcagcgttaca 29218  T
Q  106 agggcacgattatttccgaggagggaccaacacggctatgtttattgaccagcactgcaagtaagcaaatgctagtcgccccgcagcgttacaagggcac 205  Q
    ||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||  ||||||||||||||||||||||||||||||||||||||||    
T  29219 agggcacaattttttccgaggagggaccaacacggctatgtttattgacctgcactgc--gtaagcaaatgctagtcgccccgcagcgttacaagggcac 29316  T
Q  206 aagtttttccgaggagggac 225  Q
    ||||||||||||| ||||||    
T  29317 aagtttttccgagaagggac 29336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #8
Raw Score: 184; E-Value: 4e-99
Query Start/End: Original strand, 6 - 225
Target Start/End: Complemental strand, 62419 - 62200
Alignment:
Q  6 caactcaaacacgacaaagattaagaggacgtgagtcaacccaaattcaatgccacgagagagtttcgtatgcaagtgctagtcgccccgcagcgttaca 105  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  62419 caactcaaacacaacaaagattaagaggacgtgagtcaacccaaattcaatgccacgagagagttttgtatgcaagtgctagtcgccccgcagcgttaca 62320  T
Q  106 agggcacgattatttccgaggagggaccaacacggctatgtttattgaccagcactgcaagtaagcaaatgctagtcgccccgcagcgttacaagggcac 205  Q
    ||||||| ||||||||||||||||||||||||| |||||||||||||||| |||||||  ||||| ||||||||||||||||||||||||||||||||||    
T  62319 agggcacaattatttccgaggagggaccaacacagctatgtttattgacctgcactgctggtaagaaaatgctagtcgccccgcagcgttacaagggcac 62220  T
Q  206 aagtttttccgaggagggac 225  Q
    ||||||||||||| ||||||    
T  62219 aagtttttccgagaagggac 62200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #9
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 6 - 225
Target Start/End: Original strand, 49727 - 49944
Alignment:
Q  6 caactcaaacacgacaaagattaagaggacgtgagtcaacccaaattcaatgccacgagagagtttcgtatgcaagtgctagtcgccccgcagcgttaca 105  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  49727 caactcaaacacggcaaagattaagaggacgtgagtcaacccaaattcaatgccacgagagagttttgtatgcaagtgctagtcgccccgcagcgttaca 49826  T
Q  106 agggcacgattatttccgaggagggaccaacacggctatgtttattgaccagcactgcaagtaagcaaatgctagtcgccccgcagcgttacaagggcac 205  Q
    ||||||| ||| |||| ||||||||||||||||||||||||||||||||| |||||||  ||||||||||||||||||||||||||||||||||||||||    
T  49827 agggcacaattttttctgaggagggaccaacacggctatgtttattgacctgcactgc--gtaagcaaatgctagtcgccccgcagcgttacaagggcac 49924  T
Q  206 aagtttttccgaggagggac 225  Q
    ||||||||||||| ||||||    
T  49925 aagtttttccgagaagggac 49944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #10
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 20 - 225
Target Start/End: Original strand, 19861 - 20064
Alignment:
Q  20 caaagattaagaggacgtgagtcaacccaaattcaatgccacgagagagtttcgtatgcaagtgctagtcgccccgcagcgttacaagggcacgattatt 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| ||| ||    
T  19861 caaagattaagaggacgtgagtcaacccaaattcaatgccacgagagagttttgtatgcaagtgctagtcgccccgcaccgttacaagggcacaattttt 19960  T
Q  120 tccgaggagggaccaacacggctatgtttattgaccagcactgcaagtaagcaaatgctagtcgccccgcagcgttacaagggcacaagtttttccgagg 219  Q
    |||||||||||||||||||||||||||||||||||| |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  19961 tccgaggagggaccaacacggctatgtttattgacctgcactgc--gtaagcaaatgctagtcgccccgcagcgttacaagggcacaagtttttccgaga 20058  T
Q  220 agggac 225  Q
    ||||||    
T  20059 agggac 20064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #11
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 20 - 225
Target Start/End: Original strand, 52332 - 52535
Alignment:
Q  20 caaagattaagaggacgtgagtcaacccaaattcaatgccacgagagagtttcgtatgcaagtgctagtcgccccgcagcgttacaagggcacgattatt 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| ||| ||    
T  52332 caaagattaagaggacgtgagtcaacccaaattcaatgccacgagagagttttgtatgcaagtgctagtcgccccgcaccgttacaagggcacaattttt 52431  T
Q  120 tccgaggagggaccaacacggctatgtttattgaccagcactgcaagtaagcaaatgctagtcgccccgcagcgttacaagggcacaagtttttccgagg 219  Q
    |||||||||||||||||||||||||||||||||||| |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  52432 tccgaggagggaccaacacggctatgtttattgacctgcactgc--gtaagcaaatgctagtcgccccgcagcgttacaagggcacaagtttttccgaga 52529  T
Q  220 agggac 225  Q
    ||||||    
T  52530 agggac 52535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #12
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 41 - 256
Target Start/End: Original strand, 70913 - 71128
Alignment:
Q  41 tcaacccaaattcaatgccacgagagagtttcgtatgcaagtgctagtcgccccgcagcgttacaagggcacgattatttccgaggagggaccaacacgg 140  Q
    ||||||||||||||||||||||| |||||||||||||||| |||| ||||||| ||| |||||||||||||| ||| |||||||  ||||||||||||||    
T  70913 tcaacccaaattcaatgccacgaaagagtttcgtatgcaaatgctggtcgccctgcatcgttacaagggcacaattttttccgataagggaccaacacgg 71012  T
Q  141 ctatgtttattgaccagcactgcaagtaagcaaatgctagtcgccccgcagcgttacaagggcacaagtttttccgaggagggaccaacacggctatgtt 240  Q
    ||||||||||||||| |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  71013 ctatgtttattgacctgcactgcctgtaagcaaatgctagtcgccccgcagcgttacaagggcacaagtttttccgagaagggaccaacacggctatgtt 71112  T
Q  241 tattgacctgcactgc 256  Q
    ||||||||||||||||    
T  71113 tattgacctgcactgc 71128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #13
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 170 - 316
Target Start/End: Original strand, 70949 - 71097
Alignment:
Q  170 gcaaatgctagtcgccccgcagcgttacaagggcacaagtttttccgaggagggaccaacacggctatgtttattgacctgcactgc--gtaagcaaatg 267  Q
    ||||||||| ||||||| ||| |||||||||||||||| |||||||||  |||||||||||||||||||||||||||||||||||||  |||||||||||    
T  70949 gcaaatgctggtcgccctgcatcgttacaagggcacaattttttccgataagggaccaacacggctatgtttattgacctgcactgcctgtaagcaaatg 71048  T
Q  268 ctagtcgccccgcagcgttacaagggcacaagtttttccgagaagggac 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  71049 ctagtcgccccgcagcgttacaagggcacaagtttttccgagaagggac 71097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #14
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 621 - 774
Target Start/End: Original strand, 72436 - 72589
Alignment:
Q  621 tttggcctgtgcttgcccaagtcaagaacagcaagatttccccctatttcccaccaaatctgccccaaattcatcaaaatgatccgaatttatcnnnnnn 720  Q
    |||||||||||  |||||| | ||||||| ||||||||||||||   |||||||||||||| ||||||||||||||||| ||||| |||||||           
T  72436 tttggcctgtggctgcccaggccaagaacggcaagatttcccccacattcccaccaaatctcccccaaattcatcaaaaagatcccaatttattaaaaaa 72535  T
Q  721 nnttgatgaaagcagctcaaattgatgaatttggggcagatttggggggagcag 774  Q
      |||||||||||||||||||||||||||  |||| ||||||||||||||||||    
T  72536 atttgatgaaagcagctcaaattgatgaaaatgggacagatttggggggagcag 72589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #15
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 77 - 165
Target Start/End: Original strand, 71042 - 71130
Alignment:
Q  77 gcaagtgctagtcgccccgcagcgttacaagggcacgattatttccgaggagggaccaacacggctatgtttattgaccagcactgcaa 165  Q
    |||| ||||||||||||||||||||||||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||||||    
T  71042 gcaaatgctagtcgccccgcagcgttacaagggcacaagtttttccgagaagggaccaacacggctatgtttattgacctgcactgcaa 71130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #16
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 621 - 749
Target Start/End: Complemental strand, 61242 - 61115
Alignment:
Q  621 tttggcctgtgcttgcccaagtcaagaacagcaagatttccccctatttcccaccaaatctgccccaaattcatcaaaatgatccgaatttatcnnnnnn 720  Q
    |||||||||||  ||| || | ||||||| ||||||||||||||  ||||||||||||||| || |||||||||||||| ||||| ||||||||          
T  61242 tttggcctgtggctgcacaggccaagaacggcaagatttcccccactttcccaccaaatctcccacaaattcatcaaaa-gatcccaatttatcaaaaaa 61144  T
Q  721 nnttgatgaaagcagctcaaattgatgaa 749  Q
      |||||||||||||||||||||||||||    
T  61143 atttgatgaaagcagctcaaattgatgaa 61115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #17
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 202 - 256
Target Start/End: Original strand, 29060 - 29114
Alignment:
Q  202 gcacaagtttttccgaggagggaccaacacggctatgtttattgacctgcactgc 256  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  29060 gcacaagtttttccgagaagggaccaacacggctatgtttattgacctgcactgc 29114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #18
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 202 - 256
Target Start/End: Original strand, 49668 - 49722
Alignment:
Q  202 gcacaagtttttccgaggagggaccaacacggctatgtttattgacctgcactgc 256  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  49668 gcacaagtttttccgagaagggaccaacacggctatgtttattgacctgcactgc 49722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #19
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 621 - 714
Target Start/End: Complemental strand, 3288 - 3196
Alignment:
Q  621 tttggcctgtgcttgcccaagtcaagaacagcaagatttccccctatttcccaccaaatctgccccaaattcatcaaaatgatccgaatttatc 714  Q
    |||||||||||  |||||| | ||||||| ||||||||||||||  ||||||||||||||| ||||||||||||||||| ||||| ||||||||    
T  3288 tttggcctgtggctgcccaggccaagaacggcaagatttcccccactttcccaccaaatctcccccaaattcatcaaaa-gatcccaatttatc 3196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #20
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 621 - 714
Target Start/End: Complemental strand, 17813 - 17721
Alignment:
Q  621 tttggcctgtgcttgcccaagtcaagaacagcaagatttccccctatttcccaccaaatctgccccaaattcatcaaaatgatccgaatttatc 714  Q
    |||||||||||  |||||| | ||||||| ||||||||||||||  ||||||||||||||| ||||||||||||||||| ||||| ||||||||    
T  17813 tttggcctgtggctgcccaggccaagaacggcaagatttcccccactttcccaccaaatctcccccaaattcatcaaaa-gatcccaatttatc 17721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #21
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 621 - 714
Target Start/End: Complemental strand, 41304 - 41212
Alignment:
Q  621 tttggcctgtgcttgcccaagtcaagaacagcaagatttccccctatttcccaccaaatctgccccaaattcatcaaaatgatccgaatttatc 714  Q
    |||||||||||  |||||| | ||||||| ||||||||||||||  ||||||||||||||| ||||||||||||||||| ||||| ||||||||    
T  41304 tttggcctgtggctgcccaggccaagaacggcaagatttcccccactttcccaccaaatctcccccaaattcatcaaaa-gatcccaatttatc 41212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #22
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 621 - 714
Target Start/End: Original strand, 53931 - 54023
Alignment:
Q  621 tttggcctgtgcttgcccaagtcaagaacagcaagatttccccctatttcccaccaaatctgccccaaattcatcaaaatgatccgaatttatc 714  Q
    |||||||||||  |||||| | ||||||| ||||||||||||||  ||||||||||||||| ||||||||||||||||| ||||| ||||||||    
T  53931 tttggcctgtggctgcccaggccaagaacggcaagatttcccccactttcccaccaaatctcccccaaattcatcaaaa-gatcccaatttatc 54023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #23
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 202 - 256
Target Start/End: Original strand, 19788 - 19842
Alignment:
Q  202 gcacaagtttttccgaggagggaccaacacggctatgtttattgacctgcactgc 256  Q
    ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  19788 gcacaagttttcccgagaagggaccaacacggctatgtttattgacctgcactgc 19842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #24
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 202 - 256
Target Start/End: Original strand, 70850 - 70904
Alignment:
Q  202 gcacaagtttttccgaggagggaccaacacggctatgtttattgacctgcactgc 256  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||    
T  70850 gcacaagtttttccgagaagggaccaacacggctatgtttattgaccagcactgc 70904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #25
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 723 - 780
Target Start/End: Original strand, 80567 - 80624
Alignment:
Q  723 ttgatgaaagcagctcaaattgatgaatttggggcagatttggggggagcagcttgtt 780  Q
    |||||||||||||||||||||||||||  |||||||||||||||||||||||| ||||    
T  80567 ttgatgaaagcagctcaaattgatgaaaatggggcagatttggggggagcagcctgtt 80624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #26
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 118 - 165
Target Start/End: Original strand, 70859 - 70906
Alignment:
Q  118 tttccgaggagggaccaacacggctatgtttattgaccagcactgcaa 165  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||    
T  70859 tttccgagaagggaccaacacggctatgtttattgaccagcactgcaa 70906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #27
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 210 - 256
Target Start/End: Original strand, 52267 - 52313
Alignment:
Q  210 ttttccgaggagggaccaacacggctatgtttattgacctgcactgc 256  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||    
T  52267 ttttccgagaagggaccaacacggctatgtttattgacctgcactgc 52313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #28
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 202 - 254
Target Start/End: Complemental strand, 62478 - 62426
Alignment:
Q  202 gcacaagtttttccgaggagggaccaacacggctatgtttattgacctgcact 254  Q
    |||||||| |||||||| |||||||||||||||||||||||||||||| ||||    
T  62478 gcacaagtgtttccgagaagggaccaacacggctatgtttattgacctacact 62426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #29
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 118 - 165
Target Start/End: Original strand, 29069 - 29116
Alignment:
Q  118 tttccgaggagggaccaacacggctatgtttattgaccagcactgcaa 165  Q
    |||||||| ||||||||||||||||||||||||||||| |||||||||    
T  29069 tttccgagaagggaccaacacggctatgtttattgacctgcactgcaa 29116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #30
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 118 - 165
Target Start/End: Original strand, 49677 - 49724
Alignment:
Q  118 tttccgaggagggaccaacacggctatgtttattgaccagcactgcaa 165  Q
    |||||||| ||||||||||||||||||||||||||||| |||||||||    
T  49677 tttccgagaagggaccaacacggctatgtttattgacctgcactgcaa 49724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #31
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 118 - 165
Target Start/End: Original strand, 52268 - 52315
Alignment:
Q  118 tttccgaggagggaccaacacggctatgtttattgaccagcactgcaa 165  Q
    |||||||| ||||||||||||||||||||||||||||| |||||||||    
T  52268 tttccgagaagggaccaacacggctatgtttattgacctgcactgcaa 52315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #32
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 165
Target Start/End: Original strand, 19800 - 19844
Alignment:
Q  121 ccgaggagggaccaacacggctatgtttattgaccagcactgcaa 165  Q
    ||||| ||||||||||||||||||||||||||||| |||||||||    
T  19800 ccgagaagggaccaacacggctatgtttattgacctgcactgcaa 19844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #33
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 256 - 316
Target Start/End: Original strand, 70944 - 71004
Alignment:
Q  256 cgtaagcaaatgctagtcgccccgcagcgttacaagggcacaagtttttccgagaagggac 316  Q
    |||| ||||||||| ||||||| ||| |||||||||||||||| ||||||||| |||||||    
T  70944 cgtatgcaaatgctggtcgccctgcatcgttacaagggcacaattttttccgataagggac 71004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #34
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 155
Target Start/End: Complemental strand, 62469 - 62432
Alignment:
Q  118 tttccgaggagggaccaacacggctatgtttattgacc 155  Q
    |||||||| |||||||||||||||||||||||||||||    
T  62469 tttccgagaagggaccaacacggctatgtttattgacc 62432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 585; Significance: 0; HSPs: 17)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 585; E-Value: 0
Query Start/End: Original strand, 170 - 844
Target Start/End: Original strand, 48060 - 48734
Alignment:
Q  170 gcaaatgctagtcgccccgcagcgttacaagggcacaagtttttccgaggagggaccaacacggctatgtttattgacctgcactgcgtaagcaaatgct 269  Q
    |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48060 gcaagtgctagtcgccccgcagcgttacaagggcacaattttttccgaggagggaccaacacggctatgtttattgacctgcactgcgtaagcaaatgct 48159  T
Q  270 agtcgccccgcagcgttacaagggcacaagtttttccgagaagggacgtgcacgggtttcttactagctacgctagccgccccaccgtacatgggcggcg 369  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48160 agtcgccccgcagcgttacaagggcacaagtttttccgagaagggacgtgcacgggtttcttactagctacgctagccgccccaccgtacatgggcggcg 48259  T
Q  370 tgagaaagagggagaaattttgctttaccgtgaccaagacagagtttggccaagacgaggcatgaacaaacattgaactgcatgcttggcctgtgcctgc 469  Q
    ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |||||||||||||||    
T  48260 tgagaaagaggcagaaattttgctttaccgtgaccaagacagtgtttggccaagacgaggcatgaacaaacgttgaactgcatgtttggcctgtgcctgc 48359  T
Q  470 ccaagtcacgagcggcaagacgaccccctctttcccacgctgggtggctgggcctttccgacgggacgtggaaaatatgaatcaatcctactcttccatg 569  Q
    ||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  48360 ccaagtcacgaacggcaagacgaccccctctttcccacgct-ggtggctgggcc-ttccgacgggacgtggaaaatatgaatcaatcctactcttccatg 48457  T
Q  570 acaacaacaaag-ttggccaagacgaggcatgaacaaatgttgaactgcatgtttggcctgtgcttgccc-aagtcaagaacagcaagatttccccctat 667  Q
    ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  48458 acaacgacaaagtttggccaagacgaggcatgaacaaatgttgaactgcatgtttggcctgtgcttgcccaaagtcaagaacagcaagatttccccctat 48557  T
Q  668 ttcccaccaaatctgccccaaattcatcaaaatgatccgaatttatcnnnnnnnnttgatgaaagcagctcaaattgatgaatttggggcagatttgggg 767  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||    
T  48558 ttcccaccaaatctgcccgaaattcatcaaaatgatccgaatttatcaaaatcttttgatgaaagcagctcaaattgatgaatttggggcagatttgggg 48657  T
Q  768 ggagcagcttgttttttggtggctgggggctgcctgggcgcgccccagacagtcccccagccatgcccagccatgcc 844  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48658 ggagcagcttgttttttggtggctgggggctgcctgggcgcgccccagacagtcccccagccatgcccagccatgcc 48734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #2
Raw Score: 567; E-Value: 0
Query Start/End: Original strand, 175 - 844
Target Start/End: Original strand, 94664 - 95334
Alignment:
Q  175 tgctagtcgccccgcagcgttacaagggcacaagtttttccgaggagggaccaacacggctatgtttattgacctgcactgcgtaagcaaatgctagtcg 274  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  94664 tgctagtcgccccgcagcgttacaagggcacaagtttttccgtggagggaccaacacggctatgtttattgacctgcactacgtaagcaaatgctagtcg 94763  T
Q  275 ccccgcagcgttacaagggcacaagtttttccgagaagggacgtgcacgggtttcttactagctacgctagccgccccaccgtacatgggcggcgtgaga 374  Q
    ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  94764 ccccggagcgttacaagggcacaagttttttcgagaagggacgtgcacgggtttcttactagctacgcgagccgccccaccgtacatgggcggcgtgaga 94863  T
Q  375 aagagggagaaattttgctttaccgtgaccaagacagagtttggccaagacgaggcatgaacaaacattgaactgcatgcttggcctgtgcctgcccaag 474  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  94864 aagagggagaaattttgctttaccgtgaccaagacagagtttggccaagacgaggcatgaacaaacgttgaactgcatgcttggcctgtgcctgcccaag 94963  T
Q  475 tcacgagcggcaagacgaccccctctttcccacgctgggtggctgggcctttccgacgggacgtggaaaatatgaatcaatcctactcttccatgacaac 574  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  94964 tcacgagcggcaatacgaccccctctttcccacgctgggtggctgggcctttccgacgggacgtgcaaaatatgaatcaatcctactcttccatgacaac 95063  T
Q  575 aacaaag-ttggccaagacgaggcatgaacaaatgttgaactgcatgtttggcctgtgcttgcccaagtcaagaacagcaagatttccccctatttccca 673  Q
     |||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  95064 gacaaagtttggccaagacgagggatgaacaaatgttgaactgcatctttggcctgtgcttgcccaagtcaagaacaacaagatttccccctatttccca 95163  T
Q  674 ccaaatctgccccaaattcatcaaaatgatccgaatttatcnnnnnnnnttgatgaaagcagctcaaattgatgaatttggggcagatttggggggagca 773  Q
    ||||||||||||||||||||||||||||||| |||||||||        ||| ||||||||||||||||||||||||||||||||||||||||||||| |    
T  95164 ccaaatctgccccaaattcatcaaaatgatcggaatttatcaaaaaaatttgctgaaagcagctcaaattgatgaatttggggcagatttggggggagga 95263  T
Q  774 gcttgttttttggtggctgggggctgcctgggcgcgccccagacagtcccccagccatgcccagccatgcc 844  Q
     |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  95264 tcttgtttttttgtggctgggggctgcctgggcgcgccccagacagtcccccagctatgcccagccatgcc 95334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #3
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 423 - 794
Target Start/End: Original strand, 34068 - 34440
Alignment:
Q  423 gacgaggcatgaacaaacattgaactgcatgcttggcctgtgcctgcccaagtcacgagcggcaagacgaccccctctttcccacgctgggtggctgggc 522  Q
    ||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||| |    
T  34068 gacgaggcatgaacaaacattgaactgcatgtttggcctatgcctgccgaagtcacgaacggcaagacgaccccctcttttccacgctgggtggctggtc 34167  T
Q  523 ctttccgacgggacgtggaaaatatgaatcaatcctactcttccatgacaacaacaaag-ttggccaagacgaggcatgaacaaatgttgaactgcatgt 621  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||    
T  34168 ctttccgacgggacgtggaaaatatgaatcaatcctactcttccatgacaacgacaaagtttggcaaagacgaggcatgaacaaatgttgaactgcatgt 34267  T
Q  622 ttggcctgtgcttgcccaagtcaagaacagcaagatttccccctatttcccaccaaatctgccccaaattcatcaaaatgatccgaatttatcnnnnnnn 721  Q
    ||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||| || ||||||           
T  34268 ttggcttgtgcttgcccaagtcaagaacagaaagatttccccttatttcccaccaaatatgccccaaattcatcaaaatgatcggattttatcaaaaaaa 34367  T
Q  722 nttgatgaaagcagctcaaattgatgaatttggggcagatttggggggagcagcttgttttttggtggctggg 794  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34368 tttgatgaaagcagctcaaattgatgaatttggggcagatttggggggagcagcttgttttttggtggctggg 34440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #4
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 6 - 325
Target Start/End: Original strand, 33743 - 34063
Alignment:
Q  6 caactcaaacacgacaaagattaaga-ggacgtgagtcaacccaaattcaatgccacgagagagtttcgtatgcaagtgctagtcgccccgcagcgttac 104  Q
    |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||    
T  33743 caactcaaacacaacaaagattaagatggacgtgagtcaacccaaattcaatgccacgagagagtttcgtatgcaagtgctggtagccccacagcgttac 33842  T
Q  105 aagggcacgattatttccgaggagggaccaacacggctatgtttattgaccagcactgcaagtaagcaaatgctagtcgccccgcagcgttacaagggca 204  Q
    |||||||| ||| |||||||  ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  33843 aagggcacaattttttccgataagggaccaacacggctatgtttattaaccagcactgcaaataagcaaatgctagtcgccctgcagcgttacaagggca 33942  T
Q  205 caagtttttccgaggagggaccaacacggctatgtttattgacctgcactgcgtaagcaaatgctagtcgccccgcagcgttacaagggcacaagttttt 304  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  33943 caagtttttccgtggagggaccaacacggctatgtttattgacctgcactgcgtaagcaaatgctagtcgccccgcagcgttacaagggcacaagtttat 34042  T
Q  305 ccgagaagggacgtgcacggg 325  Q
    ||||||||| | |||||||||    
T  34043 ccgagaaggtatgtgcacggg 34063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #5
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 6 - 225
Target Start/End: Original strand, 47989 - 48206
Alignment:
Q  6 caactcaaacacgacaaagattaagaggacgtgagtcaacccaaattcaatgccacgagagagtttcgtatgcaagtgctagtcgccccgcagcgttaca 105  Q
    ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  47989 caactcaaacacggcatagattaagaggacgtgagtcaacccaaattcaatgccacgagagagttttgtatgcaagtgctagtcgccccgcagcgttaca 48088  T
Q  106 agggcacgattatttccgaggagggaccaacacggctatgtttattgaccagcactgcaagtaagcaaatgctagtcgccccgcagcgttacaagggcac 205  Q
    ||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||  ||||||||||||||||||||||||||||||||||||||||    
T  48089 agggcacaattttttccgaggagggaccaacacggctatgtttattgacctgcactgc--gtaagcaaatgctagtcgccccgcagcgttacaagggcac 48186  T
Q  206 aagtttttccgaggagggac 225  Q
    ||||||||||||| ||||||    
T  48187 aagtttttccgagaagggac 48206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #6
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 82 - 225
Target Start/End: Original strand, 94664 - 94805
Alignment:
Q  82 tgctagtcgccccgcagcgttacaagggcacgattatttccgaggagggaccaacacggctatgtttattgaccagcactgcaagtaagcaaatgctagt 181  Q
    ||||||||||||||||||||||||||||||| | | |||||| ||||||||||||||||||||||||||||||| |||||  | ||||||||||||||||    
T  94664 tgctagtcgccccgcagcgttacaagggcacaagtttttccgtggagggaccaacacggctatgtttattgacctgcact--acgtaagcaaatgctagt 94761  T
Q  182 cgccccgcagcgttacaagggcacaagtttttccgaggagggac 225  Q
    ||||||| |||||||||||||||||||||||| |||| ||||||    
T  94762 cgccccggagcgttacaagggcacaagttttttcgagaagggac 94805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #7
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 621 - 774
Target Start/End: Original strand, 50744 - 50897
Alignment:
Q  621 tttggcctgtgcttgcccaagtcaagaacagcaagatttccccctatttcccaccaaatctgccccaaattcatcaaaatgatccgaatttatcnnnnnn 720  Q
    |||||||||||  |||||| | ||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||| |||||||           
T  50744 tttggcctgtggctgcccaggccaagaacggcaagatttccccctctttcccaccaaatctcccccaaattcatcaaaaagatcccaatttattaaaaaa 50843  T
Q  721 nnttgatgaaagcagctcaaattgatgaatttggggcagatttggggggagcag 774  Q
      |||||||||||||||||||||||||||  |||| ||||||||||||||||||    
T  50844 atttgatgaaagcagctcaaattgatgaaaatgggacagatttggggggagcag 50897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #8
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 621 - 780
Target Start/End: Original strand, 49605 - 49763
Alignment:
Q  621 tttggcctgtgcttgcccaagtcaagaacagcaagatttccccctatttcccaccaaatctgccccaaattcatcaaaatgatccgaatttatcnnnnnn 720  Q
    |||||||||||  |||||| | ||||||| ||||||||||||||  ||||||||||||||| ||||||||||||||||| |   | ||||||||          
T  49605 tttggcctgtggctgcccaggccaagaacggcaagatttcccccactttcccaccaaatctcccccaaattcatcaaaa-gtggccaatttatcaaaaaa 49703  T
Q  721 nnttgatgaaagcagctcaaattgatgaatttggggcagatttggggggagcagcttgtt 780  Q
      ||||||||||||||| || ||||||||  |||||||||||||||||||||||| ||||    
T  49704 aattgatgaaagcagctaaatttgatgaaaatggggcagatttggggggagcagcctgtt 49763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #9
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 202 - 256
Target Start/End: Original strand, 33684 - 33738
Alignment:
Q  202 gcacaagtttttccgaggagggaccaacacggctatgtttattgacctgcactgc 256  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  33684 gcacaagtttttccgagaagggaccaacacggctatgtttattgacctgcactgc 33738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #10
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 202 - 256
Target Start/End: Original strand, 47930 - 47984
Alignment:
Q  202 gcacaagtttttccgaggagggaccaacacggctatgtttattgacctgcactgc 256  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  47930 gcacaagtttttccgagaagggaccaacacggctatgtttattgacctgcactgc 47984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #11
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 667 - 780
Target Start/End: Original strand, 39713 - 39825
Alignment:
Q  667 tttcccaccaaatctgccccaaattcatcaaaatgatccgaatttatcnnnnnnnnttgatgaaagcagctcaaattgatgaatttggggcagatttggg 766  Q
    ||||||||||||||| |||||||||||||||||    || ||||||||        |||||||||||||||||||||||||||  |||||||||||||||    
T  39713 tttcccaccaaatctcccccaaattcatcaaaagtggcc-aatttatcaattttttttgatgaaagcagctcaaattgatgaaaatggggcagatttggg 39811  T
Q  767 gggagcagcttgtt 780  Q
    ||||||||| ||||    
T  39812 gggagcagcctgtt 39825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #12
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 643 - 768
Target Start/End: Original strand, 34876 - 35000
Alignment:
Q  643 caagaacagcaagatttccccctatttcccaccaaatctgccccaaattcatcaaaatgatccgaatttatcnnnnnnnnttgatgaaagcagctcaaat 742  Q
    ||||||| ||||||| ||||||  ||||||||||||||| ||||||||||||||| ||   || ||||||||        ||||||||||||||||||||    
T  34876 caagaacggcaagatctcccccactttcccaccaaatctcccccaaattcatcaacattggcc-aatttatcaaaaacatttgatgaaagcagctcaaat 34974  T
Q  743 tgatgaatttggggcagatttggggg 768  Q
    |||||||  ||||||||||| |||||    
T  34975 tgatgaaaatggggcagattaggggg 35000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #13
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 625 - 780
Target Start/End: Original strand, 38602 - 38757
Alignment:
Q  625 gcctgtgcttgcccaagtcaagaacagcaagatttccccctatttcccaccaaatctgccccaaattcatcaaaatgatccgaatttatc-nnnnnnnnt 723  Q
    |||||||  |||||| | ||||||| ||||||||||||||  ||||||||||||||| ||||||||||||||||| |   | ||||||||         |    
T  38602 gcctgtggctgcccaggccaagaacggcaagatttcccccactttcccaccaaatctcccccaaattcatcaaaa-gtggccaatttatcaaaaaaaaat 38700  T
Q  724 tgatgaaagcagctcaaattgatgaatttggggcagatttggggggagcagcttgtt 780  Q
    |||  |||||||||||||||||||||  ||||||||||||| |||||||||| ||||    
T  38701 tgaataaagcagctcaaattgatgaaaatggggcagatttgaggggagcagcctgtt 38757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #14
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 407 - 477
Target Start/End: Original strand, 34220 - 34290
Alignment:
Q  407 gacagagtttggccaagacgaggcatgaacaaacattgaactgcatgcttggcctgtgcctgcccaagtca 477  Q
    |||| |||||||| |||||||||||||||||||  |||||||||||| ||||| ||||| |||||||||||    
T  34220 gacaaagtttggcaaagacgaggcatgaacaaatgttgaactgcatgtttggcttgtgcttgcccaagtca 34290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #15
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 621 - 694
Target Start/End: Original strand, 96321 - 96394
Alignment:
Q  621 tttggcctgtgcttgcccaagtcaagaacagcaagatttccccctatttcccaccaaatctgccccaaattcat 694  Q
    |||||||||||  |||||| | ||||||| ||||||||||||||  ||||||||||||||| ||||||||||||    
T  96321 tttggcctgtggctgcccaggccaagaacggcaagatttcccccactttcccaccaaatctcccccaaattcat 96394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #16
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 118 - 165
Target Start/End: Original strand, 33693 - 33740
Alignment:
Q  118 tttccgaggagggaccaacacggctatgtttattgaccagcactgcaa 165  Q
    |||||||| ||||||||||||||||||||||||||||| |||||||||    
T  33693 tttccgagaagggaccaacacggctatgtttattgacctgcactgcaa 33740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #17
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 118 - 165
Target Start/End: Original strand, 47939 - 47986
Alignment:
Q  118 tttccgaggagggaccaacacggctatgtttattgaccagcactgcaa 165  Q
    |||||||| ||||||||||||||||||||||||||||| |||||||||    
T  47939 tttccgagaagggaccaacacggctatgtttattgacctgcactgcaa 47986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 169 - 691
Target Start/End: Original strand, 9476336 - 9476855
Alignment:
Q  169 agcaaatgctagtcgccccgcagcgttacaagggcacaagtttttccgaggagggaccaacacggctatgtttattgacctgcactgc--gtaagcaaat 266  Q
    |||||||| ||||| | ||||||||||||||||||||||||||||||||  ||||||||| | |||||||||||||| ||||||||||  ||||||||||    
T  9476336 agcaaatgttagtcactccgcagcgttacaagggcacaagtttttccgataagggaccaaaatggctatgtttattgtcctgcactgcaagtaagcaaat 9476435  T
Q  267 gctagtcgccccgcagcgttacaagggcacaagtttttccgagaagggacgtgcacgggtttcttactagctacgctagccgccccaccgtacatgggcg 366  Q
    ||||||| |||| ||  ||||||||||||||||| |||||||| |||||   |||||  ||| | |||||||||||||||| ||||||| |||  | |||    
T  9476436 gctagtctcccctcaatgttacaagggcacaagtgtttccgagtagggaacggcacgactttttgactagctacgctagccaccccaccataccagcgcg 9476535  T
Q  367 gcgtgagaaagagggagaaattttgctttaccgtgaccaagacagagtttggccaagacgaggcatgaacaaacattgaactgcatgcttggcctgtgcc 466  Q
       ||| |||||||||||| |||||||||||| ||||||||| |  |||||||||||| || |||||||||  | |||||||| ||| ||||||||||||    
T  9476536 ---tgaaaaagagggagaa-ttttgctttaccatgaccaagatattgtttggccaagatgaagcatgaacacgcgttgaactgtatgtttggcctgtgcc 9476631  T
Q  467 tgcccaagtcacgagcggcaagacgaccccctctttcccacgctgggtggctgggcctttccgacgggacgtggaaaatatgaatcaatcctactcttcc 566  Q
    ||||||||||| || || ||||| |||||| ||||||||||| ||||   ||||| | | |||||||||| ||||||| ||| ||||||| |||||||||    
T  9476632 tgcccaagtcatgaacgacaagatgaccccttctttcccacgttgggaaactgggac-taccgacgggacatggaaaagatgcatcaatcttactcttcc 9476730  T
Q  567 atgacaacaacaaag-ttggccaagacgaggcatgaacaaatgttgaactgcatgtttggcctgtgcttgcccaagtcaagaacagcaagatttccccct 665  Q
    | |||||  |||| | |||||||||||||||||||||||||||||||| |||||||||| | ||||| ||   |||||||||||| |||||||||| |||    
T  9476731 aggacaaagacaatgtttggccaagacgaggcatgaacaaatgttgaaatgcatgtttgacatgtgcctg-ttaagtcaagaacatcaagatttcctcct 9476829  T
Q  666 atttcccaccaaatctgccccaaatt 691  Q
    |||| ||||||||||| ||| |||||    
T  9476830 attttccaccaaatctcccctaaatt 9476855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 39 - 224
Target Start/End: Original strand, 9476300 - 9476484
Alignment:
Q  39 agtcaacccaaattcaatgccacgagagagtttcgtatgcaagtgctagtcgccccgcagcgttacaagggcacgattatttccgaggagggaccaacac 138  Q
    ||||||||||||||||||||||||| ||||||| ||| |||| || ||||| | |||||||||||||||||||| | | |||||||  ||||||||| |     
T  9476300 agtcaacccaaattcaatgccacgaaagagttttgta-gcaaatgttagtcactccgcagcgttacaagggcacaagtttttccgataagggaccaaaat 9476398  T
Q  139 ggctatgtttattgaccagcactgcaagtaagcaaatgctagtcgccccgcagcgttacaagggcacaagtttttccgaggaggga 224  Q
    |||||||||||||| || |||||||||||||||||||||||||| |||| ||  ||||||||||||||||| |||||||| |||||    
T  9476399 ggctatgtttattgtcctgcactgcaagtaagcaaatgctagtctcccctcaatgttacaagggcacaagtgtttccgagtaggga 9476484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 166 - 467
Target Start/End: Complemental strand, 9485676 - 9485376
Alignment:
Q  166 gtaagcaaatgctagtcgccccgcagcgttacaagggcacaagtttttccgaggagggaccaacacggctatgtttattgacctgcactgcg--taagca 263  Q
    |||||||||||||||||||||| || | |||| ||| | ||| |||||||||  |||||||||||||||||||||||||||  |||||  |   |||| |    
T  9485676 gtaagcaaatgctagtcgccccacatcattaccaggccccaattttttccgataagggaccaacacggctatgtttattgagttgcacaacaaataagaa 9485577  T
Q  264 aatgctagtcgccccgcagcgttacaagggcacaagtttttccgagaagggacgtgcacgggtttcttactagctacgctagccgccccaccgtacatgg 363  Q
    |||||||||||||||||  | |||||||||||||||||||| ||| ||| |||   ||||| ||| | ||||||||| |||||  ||||||| |||||      
T  9485576 aatgctagtcgccccgctacattacaagggcacaagttttttcgataagagaccgacacggctttatgactagctacactagctaccccaccatacat-- 9485479  T
Q  364 gcggcgtgagaaagagggagaaattttgctttaccgtgaccaagacagagtttggccaagacgaggcatgaacaaacattgaactgcatgcttggcctgt 463  Q
      ||||||| ||||||||| |  ||||| |||||| ||||||| | || ||||||| ||||||| ||||||| |||| ||||||||| || ||||||| |    
T  9485478 -tggcgtgaaaaagagggaaattttttgttttaccatgaccaacatagtgtttggctaagacgaagcatgaataaacgttgaactgcctgtttggcctat 9485380  T
Q  464 gcct 467  Q
    ||||    
T  9485379 gcct 9485376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 8 - 235
Target Start/End: Complemental strand, 9485740 - 9485514
Alignment:
Q  8 actcaaacacgacaaagattaagaggacgtgagtcaacccaaattcaatgccacgagagagtttcgtatgcaagtgctagtcgccccgcagcgttacaag 107  Q
    |||||||||| |||||||||  ||||| | | |||||| ||||||||||||||||| ||||||| ||| |||| ||||||||||||| || | |||| ||    
T  9485740 actcaaacacaacaaagatttcgaggatgag-gtcaactcaaattcaatgccacgaaagagttttgtaagcaaatgctagtcgccccacatcattaccag 9485642  T
Q  108 ggcacgattatttccgaggagggaccaacacggctatgtttattgaccagcactgcaagtaagcaaatgctagtcgccccgcagcgttacaagggcacaa 207  Q
    | | | ||| |||||||  |||||||||||||||||||||||||||   ||||  ||| |||| ||||||||||||||||||  | ||||||||||||||    
T  9485641 gccccaattttttccgataagggaccaacacggctatgtttattgagttgcacaacaaataagaaaatgctagtcgccccgctacattacaagggcacaa 9485542  T
Q  208 gtttttccgaggagggaccaacacggct 235  Q
    |||||| |||  || |||| ||||||||    
T  9485541 gttttttcgataagagaccgacacggct 9485514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 130 - 254
Target Start/End: Complemental strand, 9485872 - 9485749
Alignment:
Q  130 gaccaacacggctatgtttattgaccagcactgcaagtaagcaaatgctagtcgccccgcagcgttacaagggcacaagtttttccgaggagggaccaac 229  Q
    |||||||||||||||||||||||||| |||||||||||||| |||||||||| |||| |||| ||||||||||||||| |||||| ||| | ||||||||    
T  9485872 gaccaacacggctatgtttattgacctgcactgcaagtaagaaaatgctagtagccctgcagtgttacaagggcacaa-tttttctgagtaaggaccaac 9485774  T
Q  230 acggctatgtttattgacctgcact 254  Q
    ||| |||| ||||||||||||||||    
T  9485773 acgactatatttattgacctgcact 9485749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 131 - 254
Target Start/End: Original strand, 9476138 - 9476261
Alignment:
Q  131 accaacacggctatgtttattgaccagcactgcaagtaagcaaatgctagtcgccccgcagcgttacaagggcacaagtttttccgaggagggaccaaca 230  Q
    ||||||||| ||||||||||||| |  ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||  || |||||||||||    
T  9476138 accaacacgactatgtttattgatctacactgcaagtaagcaaatgttactcgccccgcagcgttacaagggcacaagtttttcttagtagggaccaaca 9476237  T
Q  231 cggctatgtttattgacctgcact 254  Q
       |||||||||||||||||||||    
T  9476238 taactatgtttattgacctgcact 9476261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 470 - 679
Target Start/End: Complemental strand, 9480743 - 9480536
Alignment:
Q  470 ccaagtcacgagcggcaagacgaccccctctttcccacgctgggtggctgggcctttccgacgggacgtggaaaatatgaatcaatcctactcttccatg 569  Q
    |||||||| || ||||||||||| || |||||||||| ||| || | ||||| ||  |||| ||||| ||||||| ||| ||||||| ||||||||||||    
T  9480743 ccaagtcatgatcggcaagacgatcctctctttcccatgctaggggactgggacta-ccgatgggacatggaaaagatgcatcaatcttactcttccatg 9480645  T
Q  570 acaacaacaaagtt-ggccaagacgaggcatgaacaaatgttgaactgcatgtttggcctgtgcttgcccaagtcaagaacagcaagatttccccctatt 668  Q
    |||   | || ||| || |||||| |||||||||||| |||| ||||||||||||||||||||| |||||||||||| |||| ||||||||||| || ||    
T  9480644 acag--ataatgtttggacaagacaaggcatgaacaattgttaaactgcatgtttggcctgtgcctgcccaagtcaacaacatcaagatttccctctctt 9480547  T
Q  669 tcccaccaaat 679  Q
    | |||| ||||    
T  9480546 ttccacgaaat 9480536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 202 - 305
Target Start/End: Original strand, 9476116 - 9476221
Alignment:
Q  202 gcacaagtttttccgaggagggaccaacacggctatgtttattgacctgcactgc--gtaagcaaatgctagtcgccccgcagcgttacaagggcacaag 299  Q
    |||||||||||| |||| | | ||||||||| ||||||||||||| || ||||||  ||||||||||| || ||||||||||||||||||||||||||||    
T  9476116 gcacaagttttttcgagaatgaaccaacacgactatgtttattgatctacactgcaagtaagcaaatgttactcgccccgcagcgttacaagggcacaag 9476215  T
Q  300 tttttc 305  Q
    ||||||    
T  9476216 tttttc 9476221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 223 - 303
Target Start/End: Complemental strand, 9485872 - 9485790
Alignment:
Q  223 gaccaacacggctatgtttattgacctgcactgc--gtaagcaaatgctagtcgccccgcagcgttacaagggcacaagtttt 303  Q
    ||||||||||||||||||||||||||||||||||  ||||| |||||||||| |||| |||| ||||||||||||||| ||||    
T  9485872 gaccaacacggctatgtttattgacctgcactgcaagtaagaaaatgctagtagccctgcagtgttacaagggcacaattttt 9485790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 413 - 477
Target Start/End: Complemental strand, 9480635 - 9480571
Alignment:
Q  413 gtttggccaagacgaggcatgaacaaacattgaactgcatgcttggcctgtgcctgcccaagtca 477  Q
    |||||| |||||| ||||||||||||   || ||||||||| |||||||||||||||||||||||    
T  9480635 gtttggacaagacaaggcatgaacaattgttaaactgcatgtttggcctgtgcctgcccaagtca 9480571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 161
Target Start/End: Original strand, 9476188 - 9476261
Alignment:
Q  88 tcgccccgcagcgttacaagggcacgattatttccgaggagggaccaacacggctatgtttattgaccagcact 161  Q
    ||||||||||||||||||||||||| | | ||||  || |||||||||||   ||||||||||||||| |||||    
T  9476188 tcgccccgcagcgttacaagggcacaagtttttcttagtagggaccaacataactatgtttattgacctgcact 9476261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 161
Target Start/End: Complemental strand, 9485827 - 9485749
Alignment:
Q  82 tgctagtcgccccgcagcgttacaagggcacgattatttccgaggagggaccaacacggctatgtttattgaccagcact 161  Q
    ||||||| |||| |||| ||||||||||||| ||| |||| ||| | ||||||||||| |||| |||||||||| |||||    
T  9485827 tgctagtagccctgcagtgttacaagggcacaatt-tttctgagtaaggaccaacacgactatatttattgacctgcact 9485749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 72; Significance: 3e-32; HSPs: 3)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 621 - 835
Target Start/End: Complemental strand, 18951 - 18741
Alignment:
Q  621 tttggcctgtgcttgcccaagtcaagaacagcaagatttccccctatttcccaccaaatctgccccaaattcatcaaaatgatccgaatttatcnnnnnn 720  Q
    |||||| ||| | |||||||| |||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||| ||| | ||||||||          
T  18951 tttggcatgttcctgcccaagccaagaacaacaagatttccccctctttcccaccaaatctcccccaaattcatcaaaaagattcaaatttatcaaaaaa 18852  T
Q  721 nnttgatgaaagcagctcaaattgatgaatttggggcagatttggggggagcagcttgttttttggtggctgggggctgcctgggcgcgccccagacagt 820  Q
       |  |||||| || |||||||||||||  ||| |||||||||||||||||||||||||     | | ||||||| ||||||||||||||||||||||     
T  18851 aaat--tgaaaggagatcaaattgatgaaaatggtgcagatttggggggagcagcttgttggagagagcctggggg-tgcctgggcgcgccccagacag- 18756  T
Q  821 cccccagccatgccc 835  Q
    |||||||||||||||    
T  18755 cccccagccatgccc 18741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152; HSP #2
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 621 - 835
Target Start/End: Original strand, 33761 - 33971
Alignment:
Q  621 tttggcctgtgcttgcccaagtcaagaacagcaagatttccccctatttcccaccaaatctgccccaaattcatcaaaatgatccgaatttatcnnnnnn 720  Q
    |||||| ||| | |||||||| |||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||| ||| | ||||||||          
T  33761 tttggcatgttcctgcccaagccaagaacaacaagatttccccctctttcccaccaaatctcccccaaattcatcaaaaagattcaaatttatcaaaaaa 33860  T
Q  721 nnttgatgaaagcagctcaaattgatgaatttggggcagatttggggggagcagcttgttttttggtggctgggggctgcctgggcgcgccccagacagt 820  Q
      ||  |||||| || ||||||| |||||  ||| |||||||||||||||||||||||||     | | ||||||| ||||||||||| ||||||||||     
T  33861 aatt--tgaaaggagatcaaatttatgaaaatggtgcagatttggggggagcagcttgttggagagagcctggggg-tgcctgggcgcaccccagacag- 33956  T
Q  821 cccccagccatgccc 835  Q
    |||||||||||||||    
T  33957 cccccagccatgccc 33971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152; HSP #3
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 621 - 835
Target Start/End: Complemental strand, 37777 - 37567
Alignment:
Q  621 tttggcctgtgcttgcccaagtcaagaacagcaagatttccccctatttcccaccaaatctgccccaaattcatcaaaatgatccgaatttatcnnnnnn 720  Q
    |||||| ||| | |||||||| |||||||| || ||||||||||| ||||||||||| ||| ||||||||||||||||| ||| | ||||||||          
T  37777 tttggcatgttcctgcccaagccaagaacaacaggatttccccctctttcccaccaattctcccccaaattcatcaaaaagattcaaatttatcaaaaaa 37678  T
Q  721 nnttgatgaaagcagctcaaattgatgaatttggggcagatttggggggagcagcttgttttttggtggctgggggctgcctgggcgcgccccagacagt 820  Q
       |  |||||| || |||||||||||||  ||| |||||||||||||||||||||||||     | | ||||||| ||||||||||||||||||||||     
T  37677 aaat--tgaaaggagatcaaattgatgaaaatggtgcagatttggggggagcagcttgttggagagagcctggggg-tgcctgggcgcgccccagacag- 37582  T
Q  821 cccccagccatgccc 835  Q
    |||||||||||||||    
T  37581 cccccagccatgccc 37567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0515 (Bit Score: 68; Significance: 6e-30; HSPs: 1)
Name: scaffold0515
Description:

Target: scaffold0515; HSP #1
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 621 - 835
Target Start/End: Complemental strand, 11381 - 11171
Alignment:
Q  621 tttggcctgtgcttgcccaagtcaagaacagcaagatttccccctatttcccaccaaatctgccccaaattcatcaaaatgatccgaatttatcnnnnnn 720  Q
    |||||| ||| | |||||||| |||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||| ||| | ||||||||          
T  11381 tttggcatgttcctgcccaagccaagaacaacaagatttccccctctttcccaccaaatctcccccaaattcatcaaaaagattcaaatttatcaaaaaa 11282  T
Q  721 nnttgatgaaagcagctcaaattgatgaatttggggcagatttggggggagcagcttgttttttggtggctgggggctgcctgggcgcgccccagacagt 820  Q
      ||  |||||| || ||||||| |||||  ||| |||||||||||||||||||||||||     | | ||||||| ||||||||||| ||||||||||     
T  11281 aatt--tgaaaggagatcaaatttatgaaaatggtgcagatttggggggagcagcttgttggagagagcctggggg-tgcctgggcgcaccccagacag- 11186  T
Q  821 cccccagccatgccc 835  Q
    |||||||||||||||    
T  11185 cccccagccatgccc 11171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 6e-21; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 257 - 448
Target Start/End: Complemental strand, 19657256 - 19657064
Alignment:
Q  257 gtaagcaaatgctagtcgccccgcagcgttacaagggcacaagtttttccgagaagggacgtgcacgggtttcttactagctacgctagccg-ccccacc 355  Q
    |||||||||||| ||||||||| || | ||||||||||||||||||||| ||||||||||   ||||| ||| | |||||| | |||||||  |||| ||    
T  19657256 gtaagcaaatgcaagtcgccccacatcattacaagggcacaagtttttctgagaagggaccaacacggctttttgactagccaagctagccatccccgcc 19657157  T
Q  356 gtacatgggcggcgtgagaaagagggagaaattttgctttaccgtgaccaagacagagtttggccaagacgaggcatgaacaaacattgaact 448  Q
     | |  |   ||   | |||| ||||||||||||||||||||| |||||||||||  ||||||| ||||||| |||||||||||| |||||||    
T  19657156 atgccagttgggacagggaaaaagggagaaattttgctttaccatgaccaagacaatgtttggctaagacgaagcatgaacaaacgttgaact 19657064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 166 - 235
Target Start/End: Complemental strand, 19657256 - 19657187
Alignment:
Q  166 gtaagcaaatgctagtcgccccgcagcgttacaagggcacaagtttttccgaggagggaccaacacggct 235  Q
    |||||||||||| ||||||||| || | ||||||||||||||||||||| ||| ||||||||||||||||    
T  19657256 gtaagcaaatgcaagtcgccccacatcattacaagggcacaagtttttctgagaagggaccaacacggct 19657187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 48 - 142
Target Start/End: Complemental strand, 19657281 - 19657187
Alignment:
Q  48 aaattcaatgccacgagagagtttcgtatgcaagtgctagtcgccccgcagcgttacaagggcacgattatttccgaggagggaccaacacggct 142  Q
    ||||||||| |||||| ||||||| ||| |||| ||| ||||||||| || | |||||||||||| | | |||| ||| ||||||||||||||||    
T  19657281 aaattcaataccacgaaagagttttgtaagcaaatgcaagtcgccccacatcattacaagggcacaagtttttctgagaagggaccaacacggct 19657187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 106
Target Start/End: Original strand, 32148912 - 32148978
Alignment:
Q  39 agtcaacccaaattcaatgccacgagagagtttcgtatgcaagtgctagtcgccccgcagcgttacaa 106  Q
    |||| |||||||||||||||||||| ||||||| ||| |||| ||||||||| || ||| ||||||||    
T  32148912 agtcgacccaaattcaatgccacgaaagagttt-gtaagcaaatgctagtcgtccagcaacgttacaa 32148978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 247
Target Start/End: Original strand, 32148843 - 32148888
Alignment:
Q  202 gcacaagtttttccgaggagggaccaacacggctatgtttattgac 247  Q
    |||||||||||| | || |||||||||||| |||||||||||||||    
T  32148843 gcacaagttttttcaagaagggaccaacacagctatgtttattgac 32148888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 166 - 254
Target Start/End: Original strand, 9269560 - 9269648
Alignment:
Q  166 gtaagcaaatgctagtcgccccgcagcgttacaagggcacaagtttttccgaggagggaccaacacggctatgtttattgacctgcact 254  Q
    ||||||||||| |||||||| || ||| ||| |||| |||||| |||| |||| |||||| ||||||||| |||||||| |||||||||    
T  9269560 gtaagcaaatggtagtcgcctcgtagcattataaggacacaagatttttcgagaagggactaacacggctttgtttattaacctgcact 9269648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 252
Target Start/End: Original strand, 9269722 - 9269808
Alignment:
Q  166 gtaagcaaatgctagtcgccccgcagcgttacaagggcacaagtttttccgaggagggaccaacacggctatgtttattgacctgca 252  Q
    |||||||||||||| ||  |||||| ||||||| |  ||||||||||| | |  ||||||||||||||| || |||||||| |||||    
T  9269722 gtaagcaaatgctaatcatcccgcaacgttacatgcacacaagttttttcaataagggaccaacacggccatatttattgatctgca 9269808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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