View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5645-Insertion-3 (Length: 618)
Name: NF5645-Insertion-3
Description: NF5645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5645-Insertion-3 |
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Alignment Details
Target: chr2 (Bit Score: 523; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 523; E-Value: 0
Query Start/End: Original strand, 6 - 532
Target Start/End: Original strand, 42667088 - 42667614
Alignment:
| Q |
6 |
cagtaatcacagaaaaatcctcatcctttgtttttgacataatcatagctgaaacatgatgttgtgacggcgaaacagagttaagtttcttctgtttgtt |
105 |
Q |
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| T |
42667088 |
cagtaatcacagaaaaatcctcatcctttgtttttgacataatcatagctgaaacatgattttgtgacggcgaaacagagttaagtttcttctgtttgtt |
42667187 |
T |
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| Q |
106 |
tttcttagaatagaacaaatcaggaaaaggagaagaataagaaggcacagtagtagcaggttcagaattcagaatgctctgaaaattttcaacgctttta |
205 |
Q |
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| T |
42667188 |
tttcttagaatagaacaaatcaggaaaaggagaagaataagaaggcacagtagtagcaggttcagaattcagaatgctctgaaaattttcaacgctttta |
42667287 |
T |
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| Q |
206 |
tgtctatgctgcttcttcattggaggttcagaatttataatgttctgaaaattttcaacgcttttattatgtctatgcttcttcttcattggaggttcag |
305 |
Q |
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| T |
42667288 |
tgtctatgctgcttcttcattggaggttcagaatttataatgttctgaaaattttcaacgcttttattatgtctatgcttcttcttcattggaggttcag |
42667387 |
T |
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| Q |
306 |
aatttataatgttctgaaaattttcaacgcttttatgtctatgcttcttctttcctttcaaagattgttgcattttctcatccttcgttacaattaactt |
405 |
Q |
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| T |
42667388 |
aatttataatgttctgaaaattttcaacgcttttatgtctatgcttcttctttcctttcaaagattgttgcattttctcatccttcgttacaattaactt |
42667487 |
T |
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| Q |
406 |
tttattctttctctctgcagcagtgttattttttgttttctcaatcttttcagattgatgcgtttctgatccttgcttcttcttgttctttcctttcaaa |
505 |
Q |
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| T |
42667488 |
tttattctttctctctgcagcagtgttattttttgttttctcaatcttttcagattgatgcgtttctgatccttgcttcttcttgttctttcctttcaaa |
42667587 |
T |
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| Q |
506 |
gacgtgtgtacttcaatgtccttgatg |
532 |
Q |
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| T |
42667588 |
gacgtgtgtacttcaatgtccttgatg |
42667614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 560 - 618
Target Start/End: Original strand, 42667642 - 42667700
Alignment:
| Q |
560 |
aagtttaagtccaatccacgataacggttaacatgagtatcatcgctaaatcgccactg |
618 |
Q |
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| T |
42667642 |
aagtttaagtccaatccacgataacggttaacatgagtatcatcgctaaatcgccactg |
42667700 |
T |
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