View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5645-Insertion-4 (Length: 562)
Name: NF5645-Insertion-4
Description: NF5645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5645-Insertion-4 |
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Alignment Details
Target: chr1 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 48 - 418
Target Start/End: Original strand, 4679830 - 4680201
Alignment:
| Q |
48 |
tttcttttagtgtttatgaagtcattcttcttttatagtcatgctagaaggtgtgagaactgagaagatactgtgagaaattaccttcattagataactt |
147 |
Q |
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| T |
4679830 |
tttctttta-tgtttataaagtcattcttcttttatagtcatgctatgaggtgtgagaactgagaagatactgtgagaaattaccctcattagataactt |
4679928 |
T |
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| Q |
148 |
acatagcatttgaaggtgcaagaatgggtatatatggacagttccactgtatcctgtttaattcttttggtgca-ttttttctatcttttgaactcttta |
246 |
Q |
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| T |
4679929 |
acatagcatttgaaggtgcatgaatgggtatacatggacagttccactgtatcctgtttaattcttttggtgcatttttttctatcttttgaactcttta |
4680028 |
T |
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| Q |
247 |
taattgtctattcattgaacttgtgctttgattagttgttaattgttattactgtgaattcacacaaactcgcatcaaagcatcaatactatgatgtgtg |
346 |
Q |
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| T |
4680029 |
taattgtctattcattgaacttgtgatgtgattagttgttaattgttattactgtgaattcacacaaactcgcatcaaagcatcaatactatgatgtgtg |
4680128 |
T |
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| Q |
347 |
gag-aaaaaccaacaacaaccaaaatagtttgagcaatttaaacaaaccaaccaaattgtgtagcaaaacaaa |
418 |
Q |
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| T |
4680129 |
gagcaaaaaccaacaacaaccaaaatagtttgatcaatttaaacaaaccaaccaaattgtgtagcaaaacaaa |
4680201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 428 - 562
Target Start/End: Original strand, 4680253 - 4680387
Alignment:
| Q |
428 |
aattcggctcaaattgacttacgtctagaagatagagaagctctctaattcactatcaatgaattttttgcaaagagatataaggattacaagaaataac |
527 |
Q |
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| T |
4680253 |
aattcggctcaaattgacttacgtttagaagatagagaagctctctaattcactatcaatgaattttttgcaaagagatataaggattacaagaaataac |
4680352 |
T |
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| Q |
528 |
ccttcaagtcttcaaccataaaccctaatttacac |
562 |
Q |
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| T |
4680353 |
ccttcaagtcttcaaccataaaccctaatttacac |
4680387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 468 - 524
Target Start/End: Complemental strand, 22097981 - 22097925
Alignment:
| Q |
468 |
ctctctaattcactatcaatgaattttttgcaaagagatataaggattacaagaaat |
524 |
Q |
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| T |
22097981 |
ctctctaatccactatcaatgagttttttacaaatagatacaagggttataagaaat |
22097925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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