View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5645-Insertion-5 (Length: 394)
Name: NF5645-Insertion-5
Description: NF5645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5645-Insertion-5 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 297 - 394
Target Start/End: Complemental strand, 21818395 - 21818298
Alignment:
| Q |
297 |
ttcaaacatcatcaatttcaagagcttcgttgggccaaaacgatatggagtgtagatataccaccttcaaaatccatgttcatttggagattgaagca |
394 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21818395 |
ttcaaacatcatcaatttcaagagcttcattgggccaaaacgatatggagtgtagatatcccaccttcaaaatccatgttcatttggagattgaagca |
21818298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 235 - 284
Target Start/End: Complemental strand, 21819497 - 21819449
Alignment:
| Q |
235 |
atcagtattgattaaatacaatgcatgcaaagtatatcgtttccgggtat |
284 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
21819497 |
atcagtattgactaaatacaatgcatgcaaagtatat-gtttccaggtat |
21819449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 370
Target Start/End: Complemental strand, 16010703 - 16010630
Alignment:
| Q |
297 |
ttcaaacatcatcaatttcaagagcttcgttgggccaaaacgatatggagtgtagatataccaccttcaaaatc |
370 |
Q |
| |
|
|||||||||||||| |||||||| || | |||||||||||| || |||||||| ||| | || || |||||||| |
|
|
| T |
16010703 |
ttcaaacatcatcagtttcaagatctccattgggccaaaaccatttggagtgttgatgtccctccctcaaaatc |
16010630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 326 - 370
Target Start/End: Original strand, 43581139 - 43581183
Alignment:
| Q |
326 |
ttgggccaaaacgatatggagtgtagatataccaccttcaaaatc |
370 |
Q |
| |
|
||||||||| || ||||||||||| ||||| |||||||||||||| |
|
|
| T |
43581139 |
ttgggccaatacaatatggagtgttgatattccaccttcaaaatc |
43581183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University