View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5645_high_11 (Length: 236)

Name: NF5645_high_11
Description: NF5645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5645_high_11
NF5645_high_11
[»] chr3 (10 HSPs)
chr3 (1-222)||(26736745-26736966)
chr3 (1-222)||(26713509-26713730)
chr3 (1-222)||(26743756-26743977)
chr3 (45-222)||(26750725-26750902)
chr3 (45-222)||(26698401-26698578)
chr3 (45-222)||(26733564-26733741)
chr3 (100-222)||(26675244-26675366)
chr3 (45-222)||(26694876-26695053)
chr3 (45-222)||(26732026-26732203)
chr3 (122-222)||(26690715-26690815)
[»] chr7 (5 HSPs)
chr7 (115-217)||(21130219-21130321)
chr7 (115-178)||(21111259-21111322)
chr7 (117-217)||(18658383-18658483)
chr7 (110-217)||(21108501-21108608)
chr7 (110-217)||(21098882-21098989)
[»] chr4 (1 HSPs)
chr4 (126-217)||(39132415-39132506)


Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 26736745 - 26736966
Alignment:
Q  1 caacaatttcttcaacccaacaagcaacttctagtacnnnnnnncttttctccctaacccatgttaccaacctctcatgatacaactcttctttgtcttt 100  Q
    |||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  26736745 caacaatttcttcaacccaacaagcaacttctagtacttttcttcttttctccctaacccatgttaccaatctctcatgatacaactcttctttgtcttt 26736844  T
Q  101 gatttggatacctgttgttggactctttccggtaatcatctccaacaccacaactccatagctataaacatccacttttgaagtaatttgcatgttgaaa 200  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  26736845 gatttggatacctgttgttggactctttcctgtaatcatctccaacaccacaactccatagctataaacatccacttttgaagtgatttgcatgttgaaa 26736944  T
Q  201 acccattcaggtgccatgtaac 222  Q
    ||||||||||||||||||||||    
T  26736945 acccattcaggtgccatgtaac 26736966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 26713509 - 26713730
Alignment:
Q  1 caacaatttcttcaacccaacaagcaacttctagtacnnnnnnncttttctccctaacccatgttaccaacctctcatgatacaactcttctttgtcttt 100  Q
    ||||||||||||||||||||||| |||||||||||||       |||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  26713509 caacaatttcttcaacccaacaaccaacttctagtactttttttcttttctccctaacccatgttaccaatctctcatgatacaactcttctttgtcttt 26713608  T
Q  101 gatttggatacctgttgttggactctttccggtaatcatctccaacaccacaactccatagctataaacatccacttttgaagtaatttgcatgttgaaa 200  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  26713609 gatttggataccagttgttggactctttccggtaatcatctccaacaccacaactccatagctataaacatccacttttgaagtgatttgcatgttgaaa 26713708  T
Q  201 acccattcaggtgccatgtaac 222  Q
    ||||||||||||||||||||||    
T  26713709 acccattcaggtgccatgtaac 26713730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 26743756 - 26743977
Alignment:
Q  1 caacaatttcttcaacccaacaagcaacttctagtacnnnnnnncttttctccctaacccatgttaccaacctctcatgatacaactcttctttgtcttt 100  Q
    |||||||||  |||||||||||| ||||||||| | |       |||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  26743756 caacaatttgctcaacccaacaaccaacttctaatccttttcttcttttctccctaacccatgttaccaacctctcatgacacaactcttctttgtcttt 26743855  T
Q  101 gatttggatacctgttgttggactctttccggtaatcatctccaacaccacaactccatagctataaacatccacttttgaagtaatttgcatgttgaaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |||| ||||||||||    
T  26743856 gatttggatacctgttgttggactctttccggtaatcatctccaacacaacgactccatagctataaacatccacttttgaagtgatttccatgttgaaa 26743955  T
Q  201 acccattcaggtgccatgtaac 222  Q
    ||||| ||||||||||||||||    
T  26743956 acccactcaggtgccatgtaac 26743977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 45 - 222
Target Start/End: Original strand, 26750725 - 26750902
Alignment:
Q  45 cttttctccctaacccatgttaccaacctctcatgatacaactcttctttgtctttgatttggatacctgttgttggactctttccggtaatcatctcca 144  Q
    ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26750725 cttttttccctaacccatgttaccaacctctcatgacacaactcttctttgtctttgatttggatacctgttgttggactctttccggtaatcatctcca 26750824  T
Q  145 acaccacaactccatagctataaacatccacttttgaagtaatttgcatgttgaaaacccattcaggtgccatgtaac 222  Q
    |||| || ||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  26750825 acacaacgactccatagctataaacgtccactttagaagtgatttgcatgttgaaaacccattcaggtgccatgtaac 26750902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 45 - 222
Target Start/End: Original strand, 26698401 - 26698578
Alignment:
Q  45 cttttctccctaacccatgttaccaacctctcatgatacaactcttctttgtctttgatttggatacctgttgttggactctttccggtaatcatctcca 144  Q
    ||||| ||||||||||||||| |||| ||||||| | | || ||||||   |||||| || | |||| ||||||||||| ||| || ||||| |||||||    
T  26698401 cttttttccctaacccatgttgccaagctctcatcacaaaagtcttctccatctttgtttggtatacttgttgttggacccttaccagtaattatctcca 26698500  T
Q  145 acaccacaactccatagctataaacatccacttttgaagtaatttgcatgttgaaaacccattcaggtgccatgtaac 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26698501 acaccacaactccatagctataaacatccacttttgaagtaatttgcatgttgaaaacccattcaggtgccatgtaac 26698578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 45 - 222
Target Start/End: Original strand, 26733564 - 26733741
Alignment:
Q  45 cttttctccctaacccatgttaccaacctctcatgatacaactcttctttgtctttgatttggatacctgttgttggactctttccggtaatcatctcca 144  Q
    ||||| ||||||||||||||| | || ||||||| | | || ||||||   |||||| || | |||| ||||||||||| ||| || ||||| |||||||    
T  26733564 cttttttccctaacccatgtttctaagctctcatcacaaaagtcttctccatctttgtttggtatacttgttgttggacccttaccagtaattatctcca 26733663  T
Q  145 acaccacaactccatagctataaacatccacttttgaagtaatttgcatgttgaaaacccattcaggtgccatgtaac 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26733664 acaccacaactccatagctataaacatccacttttgaagtaatttgcatgttgaaaacccattcaggtgccatgtaac 26733741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 100 - 222
Target Start/End: Original strand, 26675244 - 26675366
Alignment:
Q  100 tgatttggatacctgttgttggactctttccggtaatcatctccaacaccacaactccatagctataaacatccacttttgaagtaatttgcatgttgaa 199  Q
    |||||| |||||  || ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| || || ||||| ||| ||| ||||||    
T  26675244 tgatttcgatacaggtcgttggactctttccggtaatcatctccaacaccacaattccataactataaacatctaccttggaagtgattggcaagttgaa 26675343  T
Q  200 aacccattcaggtgccatgtaac 222  Q
    || ||||||||||||||||||||    
T  26675344 aatccattcaggtgccatgtaac 26675366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 45 - 222
Target Start/End: Complemental strand, 26695053 - 26694876
Alignment:
Q  45 cttttctccctaacccatgttaccaacctctcatgatacaactcttctttgtctttgatttggatacctgttgttggactctttccggtaatcatctcca 144  Q
    |||||||| || |||||||||||||| ||||||| ||    || ||||  |||| |||||  |||||| ||  ||| |||||| |||||||||||||| |    
T  26695053 cttttctctctcacccatgttaccaaactctcattatgagtcttttctccgtctgtgattaagatacccgtcattgcactcttcccggtaatcatctcta 26694954  T
Q  145 acaccacaactccatagctataaacatccacttttgaagtaatttgcatgttgaaaacccattcaggtgccatgtaac 222  Q
     || |||||||||||||||||||||||| || || ||||| ||| ||| |||||||| |||||||||| |||||||||    
T  26694953 gcagcacaactccatagctataaacatctaccttggaagtgattggcaagttgaaaatccattcaggtcccatgtaac 26694876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 45 - 222
Target Start/End: Complemental strand, 26732203 - 26732026
Alignment:
Q  45 cttttctccctaacccatgttaccaacctctcatgatacaactcttctttgtctttgatttggatacctgttgttggactctttccggtaatcatctcca 144  Q
    |||||||| || |||||||||||||| ||||||| ||    || ||||   ||| |||||  ||||| |||  ||| |||||| |||||||||||||| |    
T  26732203 cttttctctctcacccatgttaccaaactctcattatgagtcttttctccatctgtgattaagatacttgtcattgcactcttcccggtaatcatctcta 26732104  T
Q  145 acaccacaactccatagctataaacatccacttttgaagtaatttgcatgttgaaaacccattcaggtgccatgtaac 222  Q
     || |||||||||||||||||||||||| || || ||||| ||| ||| |||||||| ||||||||||||||||||||    
T  26732103 gcagcacaactccatagctataaacatctaccttggaagtgattggcaagttgaaaatccattcaggtgccatgtaac 26732026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 122 - 222
Target Start/End: Complemental strand, 26690815 - 26690715
Alignment:
Q  122 actctttccggtaatcatctccaacaccacaactccatagctataaacatccacttttgaagtaatttgcatgttgaaaacccattcaggtgccatgtaa 221  Q
    |||||| || ||||||||||| | || |||||||||||||||||||||||| || || ||||| ||| ||| |||||||| |||||||||||||||||||    
T  26690815 actcttcccagtaatcatctctagcagcacaactccatagctataaacatctaccttggaagtgattggcaagttgaaaatccattcaggtgccatgtaa 26690716  T
Q  222 c 222  Q
    |    
T  26690715 c 26690715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 115 - 217
Target Start/End: Original strand, 21130219 - 21130321
Alignment:
Q  115 ttgttggactctttccggtaatcatctccaacaccacaactccatagctataaacatccacttttgaagtaatttgcatgttgaaaacccattcaggtgc 214  Q
    ||||||||||||||||||| |||||||| ||||| ||||| || || ||||||||||||||||| || || ||| | |  ||||||| ||| ||||||||    
T  21130219 ttgttggactctttccggttatcatctctaacacgacaaccccgtaactataaacatccactttagatgttattggtaaattgaaaatccactcaggtgc 21130318  T
Q  215 cat 217  Q
    |||    
T  21130319 cat 21130321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 115 - 178
Target Start/End: Original strand, 21111259 - 21111322
Alignment:
Q  115 ttgttggactctttccggtaatcatctccaacaccacaactccatagctataaacatccacttt 178  Q
    ||||||||||||||||||| ||||| |||||||  ||||| ||||| |||||||||||||||||    
T  21111259 ttgttggactctttccggttatcatatccaacaaaacaaccccataactataaacatccacttt 21111322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 117 - 217
Target Start/End: Original strand, 18658383 - 18658483
Alignment:
Q  117 gttggactctttccggtaatcatctccaacaccacaactccatagctataaacatccacttttgaagtaatttgcatgttgaaaacccattcaggtgcca 216  Q
    |||||||||||||| || |||||||||||||  ||||| ||||| | ||||||||||||||| || || ||| |||  ||||||| ||| ||||| ||||    
T  18658383 gttggactctttccagttatcatctccaacaatacaaccccataaccataaacatccactttagatgttattggcaaattgaaaatccactcaggggcca 18658482  T
Q  217 t 217  Q
    |    
T  18658483 t 18658483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 217
Target Start/End: Complemental strand, 21108608 - 21108501
Alignment:
Q  110 acctgttgttggactctttccggtaatcatctccaacaccacaactccatagctataaacatccacttttgaagtaatttgcatgttgaaaacccattca 209  Q
    |||||| |||||||| ||||| || ||||| ||||| || || | |||||| |||||||||||||| || || || ||| |||  ||||||| |||||||    
T  21108608 acctgtagttggactttttcctgttatcatttccaaaacaactattccataactataaacatccaccttagatgttattggcaaattgaaaatccattca 21108509  T
Q  210 ggtgccat 217  Q
    ||||||||    
T  21108508 ggtgccat 21108501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 110 - 217
Target Start/End: Complemental strand, 21098989 - 21098882
Alignment:
Q  110 acctgttgttggactctttccggtaatcatctccaacaccacaactccatagctataaacatccacttttgaagtaatttgcatgttgaaaacccattca 209  Q
    |||||| |||||||| ||||| || ||||| ||||| || || | |||||||||||||||||| ||||| || || ||| |||  ||||||| ||||||     
T  21098989 acctgtagttggactttttcctgttatcatttccaatacaactattccatagctataaacatctactttagatgttattggcaaattgaaaatccattct 21098890  T
Q  210 ggtgccat 217  Q
    || |||||    
T  21098889 ggggccat 21098882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 217
Target Start/End: Complemental strand, 39132506 - 39132415
Alignment:
Q  126 tttccggtaatcatctccaacaccacaactccatagctataaacatccacttttgaagtaatttgcatgttgaaaacccattcaggtgccat 217  Q
    ||||| || |||||||||||||  ||||  ||||| ||||||||||||||||| || || ||| | |  ||||||||||||||||| |||||    
T  39132506 tttccagttatcatctccaacaaaacaatcccataactataaacatccactttagatgttattggtaaattgaaaacccattcaggagccat 39132415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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