View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5645_high_3 (Length: 394)
Name: NF5645_high_3
Description: NF5645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5645_high_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 311; Significance: 1e-175; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 65 - 375
Target Start/End: Original strand, 1163930 - 1164240
Alignment:
| Q |
65 |
atctaatttctcaataccgagaacagcatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaa |
164 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1163930 |
atctaatttctcaataccgagaacagcatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaa |
1164029 |
T |
|
| Q |
165 |
cagtgggtcaaggtaaatggatcaagcaaagtaaatgttttggcaaccctagtacaaataacaataggaccaatatttggacctaaagaagcagcaatat |
264 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1164030 |
cagtgggtcaaggtaaatggatcaagcaaagtaaatgttttggcaaccctagtacaaataacaataggaccaatatttggacctaaagaagcagcaatat |
1164129 |
T |
|
| Q |
265 |
tactaggcagaataatcaaatccccgcagcaaattgggacgatttcaacagaaaaaaggtatggatcaatcttgttccactgaacctgggcaggaagtat |
364 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1164130 |
tactaggcagaataatcaaatccccgcagcaaattgggacgatttcaacagaaaaaaggtatggatcaatcttgttccactgaacctgggcaggaagtat |
1164229 |
T |
|
| Q |
365 |
gtccactataa |
375 |
Q |
| |
|
||||||||||| |
|
|
| T |
1164230 |
gtccactataa |
1164240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 65 - 365
Target Start/End: Complemental strand, 1849836 - 1849536
Alignment:
| Q |
65 |
atctaatttctcaataccgagaacagcatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaa |
164 |
Q |
| |
|
|||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
1849836 |
atctaatttctcgataccgagaacaacatattccactaactgatgcctagagaatgaaggcgtgaagggtgcatcccagtaacgatcagcctttaagaaa |
1849737 |
T |
|
| Q |
165 |
cagtgggtcaaggtaaatggatcaagcaaagtaaatgttttggcaaccctagtacaaataacaataggaccaatatttggacctaaagaagcagcaatat |
264 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1849736 |
cagcgggtcaaggtaaatggatcaagcaaagtaaatgttctggcaaccctagtacaaataacaataggaccaatatttggacctaaagaagcagcaatat |
1849637 |
T |
|
| Q |
265 |
tactaggcagaataatcaaatccccgcagcaaattgggacgatttcaacagaaaaaaggtatggatcaatcttgttccactgaacctgggcaggaagtat |
364 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
1849636 |
tactaggcagaataatcaaatccccgcagcaaattgggacgatttcaacagaaaaaaggtatggatcaatcttgttccactgaaccagggcaggaagtat |
1849537 |
T |
|
| Q |
365 |
g |
365 |
Q |
| |
|
| |
|
|
| T |
1849536 |
g |
1849536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 77 - 321
Target Start/End: Complemental strand, 3299353 - 3299109
Alignment:
| Q |
77 |
aataccgagaacagcatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaag |
176 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3299353 |
aataccgagaacaacatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaag |
3299254 |
T |
|
| Q |
177 |
gtaaatggatcaagcaaagtaaatgttttggcaaccctagtacaaataacaataggaccaatatttggacctaaagaagcagcaatattactaggcagaa |
276 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
3299253 |
gtaaatggatcaagcaaagtaaatattttggcaaccctagtacaaatgacaataggaccaatatttggaccgaaagaagcagcaatatgactaggcagaa |
3299154 |
T |
|
| Q |
277 |
taatcaaatccccgcagcaaattgggacgatttcaacagaaaaaa |
321 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
3299153 |
taatcaaatccccgcaacaaattgggacgatttcaacagaaaaaa |
3299109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 77 - 321
Target Start/End: Complemental strand, 3392246 - 3392002
Alignment:
| Q |
77 |
aataccgagaacagcatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaag |
176 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3392246 |
aataccgagaacaacatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaag |
3392147 |
T |
|
| Q |
177 |
gtaaatggatcaagcaaagtaaatgttttggcaaccctagtacaaataacaataggaccaatatttggacctaaagaagcagcaatattactaggcagaa |
276 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
3392146 |
gtaaatggatcaagcaaagtaaatattttggcaaccctagtacaaatgacaataggaccaatatttggaccgaaagaagcagcaatatgactaggcagaa |
3392047 |
T |
|
| Q |
277 |
taatcaaatccccgcagcaaattgggacgatttcaacagaaaaaa |
321 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
3392046 |
taatcaaatccccgcaacaaattgggacgatttcaacagaaaaaa |
3392002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 76 - 326
Target Start/End: Complemental strand, 38987556 - 38987306
Alignment:
| Q |
76 |
caataccgagaacagcatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaa |
175 |
Q |
| |
|
||||| |||||||| ||||||| |||||||||| |||| ||||||| | ||||| ||||| | |||||| ||| ||| | |||||||||||||||||| |
|
|
| T |
38987556 |
caatatcgagaacaacatattcgactaactgagtcctattgaatgaatgtgtgaatggtgctttccagtactgatgagcatctaagaaacagtgggtcaa |
38987457 |
T |
|
| Q |
176 |
ggtaaatggatcaagcaaagtaaatgttttggcaaccctagtacaaataacaataggaccaatatttggacctaaagaagcagcaatattactaggcaga |
275 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||| ||||||||| ||| |||| ||||||| |
|
|
| T |
38987456 |
ggtaaatggatcaagcaaagtaaatgttttggcaaccctagtgcatatgacaataggaccaatatttggacccaaagaagcaacaacattaggaggcaga |
38987357 |
T |
|
| Q |
276 |
ataatcaaatccccgcagcaaattgggacgatttcaacagaaaaaaggtat |
326 |
Q |
| |
|
| |||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
38987356 |
aagatcaaatccccgcagcaaatggggacgatttcaacagaaaaaaggtat |
38987306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 82 - 326
Target Start/End: Complemental strand, 40418140 - 40417896
Alignment:
| Q |
82 |
cgagaacagcatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaaggtaaa |
181 |
Q |
| |
|
|||||||| ||||||| |||||||||| |||| ||||||| | ||||| ||||| | |||||| ||| ||| | |||||||||||||||||||||||| |
|
|
| T |
40418140 |
cgagaacaacatattcgactaactgagtcctattgaatgaatgtgtgaatggtgctttccagtactgatgagcatctaagaaacagtgggtcaaggtaaa |
40418041 |
T |
|
| Q |
182 |
tggatcaagcaaagtaaatgttttggcaaccctagtacaaataacaataggaccaatatttggacctaaagaagcagcaatattactaggcagaataatc |
281 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||| ||||||||| ||| |||| |||||||| ||| |
|
|
| T |
40418040 |
tggatcaagcaaagtaaatgttttggcaaccctagtgcaaatgacaataggaccaatattttcaccgaaagaagcaacaacattaggaggcagaaagatc |
40417941 |
T |
|
| Q |
282 |
aaatccccgcagcaaattgggacgatttcaacagaaaaaaggtat |
326 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |||||||||| |
|
|
| T |
40417940 |
aaatccccgcagcaaatggggacgatttcaacacgaaaaaggtat |
40417896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 76 - 326
Target Start/End: Complemental strand, 39726269 - 39726028
Alignment:
| Q |
76 |
caataccgagaacagcatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaa |
175 |
Q |
| |
|
||||| |||||||| ||||||| |||||||||| |||| ||||||| | ||||| ||||| | |||||| ||| ||| | |||||||||||||||||| |
|
|
| T |
39726269 |
caatatcgagaacaacatattcgactaactgagtcctattgaatgaatgtgtgaatggtgctttccagtactgatgagcatctaagaaacagtgggtcaa |
39726170 |
T |
|
| Q |
176 |
ggtaaatggatcaagcaaagtaaatgttttggcaaccctagtacaaataacaataggaccaatatttggacctaaagaagcagcaatattactaggcaga |
275 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| || || | ||||||||||||| ||||||||| ||| ||| ||||||| |
|
|
| T |
39726169 |
ggtaaatggatcaagcaaagtaaatgttttggcaaccctagtgcatatga---------caatatttggacccaaagaagcaacaacgttaggaggcaga |
39726079 |
T |
|
| Q |
276 |
ataatcaaatccccgcagcaaattgggacgatttcaacagaaaaaaggtat |
326 |
Q |
| |
|
| |||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
39726078 |
aagatcaaatccccgcagcaaatggggacgatttcaacagaaaaaaggtat |
39726028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 76 - 326
Target Start/End: Complemental strand, 39879671 - 39879430
Alignment:
| Q |
76 |
caataccgagaacagcatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaa |
175 |
Q |
| |
|
||||| |||||||| ||||||| |||||||||| |||| ||||||| | ||||| ||||| | |||||| ||| ||| | |||||||||||||||||| |
|
|
| T |
39879671 |
caatatcgagaacaacatattcgactaactgagtcctattgaatgaatgtgtgaatggtgctttccagtactgatgagcatctaagaaacagtgggtcaa |
39879572 |
T |
|
| Q |
176 |
ggtaaatggatcaagcaaagtaaatgttttggcaaccctagtacaaataacaataggaccaatatttggacctaaagaagcagcaatattactaggcaga |
275 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| || || | ||||||||||||| ||||||||| ||| ||| ||||||| |
|
|
| T |
39879571 |
ggtaaatggatcaagcaaagtaaatgttttggcaaccctagtgcatatga---------caatatttggacccaaagaagcaacaacgttaggaggcaga |
39879481 |
T |
|
| Q |
276 |
ataatcaaatccccgcagcaaattgggacgatttcaacagaaaaaaggtat |
326 |
Q |
| |
|
| |||||||||||||||||||| |||||||||| |||| |||||||||| |
|
|
| T |
39879480 |
aagatcaaatccccgcagcaaatggggacgattttaacacgaaaaaggtat |
39879430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 84 - 326
Target Start/End: Complemental strand, 39168749 - 39168516
Alignment:
| Q |
84 |
agaacagcatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaaggtaaatg |
183 |
Q |
| |
|
|||||| |||||| ||||||||||| ||||| ||||||| ||||||||||||||| |||||| | | ||||||||||| || | ||||||||||||| |
|
|
| T |
39168749 |
agaacaacatatttcactaactgagtcctagtgaatgaatgcgtgaagggtgcattccagtactcatcagcctttaaggaaaaagcagtcaaggtaaatg |
39168650 |
T |
|
| Q |
184 |
gatcaagcaaagtaaatgttttggcaaccctagtacaaataacaataggaccaatatttggacctaaagaagcagcaatattactaggcagaataatcaa |
283 |
Q |
| |
|
||||||| ||||||| | |||||||||||||||| || |||| ||||||||| ||| | || ||||||||||||| ||||||| |||||| |
|
|
| T |
39168649 |
gatcaagtaaagtaatttttttggcaaccctagtgcatataa---------caatatttgcaccgagagtagcagcaatattagggggcagaaaaatcaa |
39168559 |
T |
|
| Q |
284 |
atccccgcagcaaattgggacgatttcaacagaaaaaaggtat |
326 |
Q |
| |
|
||| |||||| |||||||||||||||||||| ||||| ||||| |
|
|
| T |
39168558 |
atctccgcagaaaattgggacgatttcaacaaaaaaatggtat |
39168516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 99 - 320
Target Start/End: Complemental strand, 39399735 - 39399520
Alignment:
| Q |
99 |
actaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaaggtaaatggatcaagcaa---ag |
195 |
Q |
| |
|
|||||||||| |||| ||||||| ||||||| ||||||| |||||| ||| ||||||||||| || | |||||||||||||||||||||||| || |
|
|
| T |
39399735 |
actaactgagtcctattgaatgaatgcgtgaaaggtgcattccagtagtgatcagcctttaaggaaaaagcggtcaaggtaaatggatcaagcaaagtag |
39399636 |
T |
|
| Q |
196 |
taaatgttttggcaaccctagtacaaataacaataggaccaatatttggacctaaagaagcagcaatattactaggcagaataatcaaatccccgcagca |
295 |
Q |
| |
|
||| | |||||||||||||||| || || | ||||||||| ||| || |||||||||| || | |||||||| |||||||||||||||||| |
|
|
| T |
39399635 |
taatttttttggcaaccctagtgcatatga---------caatatttgcaccgaacgaagcagcaacatcaggaggcagaaaaatcaaatccccgcagca |
39399545 |
T |
|
| Q |
296 |
aattgggacgatttcaacagaaaaa |
320 |
Q |
| |
|
||| ||||||||||||||| ||||| |
|
|
| T |
39399544 |
aatggggacgatttcaacaaaaaaa |
39399520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 76 - 320
Target Start/End: Complemental strand, 40596485 - 40596251
Alignment:
| Q |
76 |
caataccgagaacagcatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaa |
175 |
Q |
| |
|
||||| |||| |||| |||||||||||||||| ||||| || |||||||||||| |||||| |||||| ||| || | ||||||| ||||| |||| |
|
|
| T |
40596485 |
caatatcgagcacagaatattccactaactgactcctagtgagtgaaggcgtgaaaagtgcattccagtactgatcaacatttaagatacagtacctcaa |
40596386 |
T |
|
| Q |
176 |
ggtaaatggatcaagcaaagtaaatgttttggcaaccctagtacaaataacaataggaccaatatttggacctaaagaagcagcaatattactaggcaga |
275 |
Q |
| |
|
||| || |||||||||||||| | |||| |||||| ||||||| | |||||||| ||||||| | || | |||| ||| ||||||| |
|
|
| T |
40596385 |
ggtgaa--aatcaagcaaagtaattcttttagcaacc----tacaaatgataataggactaatattt----cccaactggatgcaaccttaggaggcaga |
40596296 |
T |
|
| Q |
276 |
ataatcaaatccccgcagcaaattgggacgatttcaacagaaaaa |
320 |
Q |
| |
|
| ||||||||||||| ||||||| ||||||||||||||||||||| |
|
|
| T |
40596295 |
aaaatcaaatccccgtagcaaatggggacgatttcaacagaaaaa |
40596251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 133; Significance: 5e-69; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 92 - 320
Target Start/End: Original strand, 25912538 - 25912766
Alignment:
| Q |
92 |
atattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaaggtaaatggatcaagc |
191 |
Q |
| |
|
|||||| |||||||||||||||| |||| |||||||||||||||||| |||||| ||| ||||||| |||||||| || |||||||||||||||||||| |
|
|
| T |
25912538 |
atattcaactaactgaggcctagtgaattaaggcgtgaagggtgcattccagtactgatcagccttcaagaaacaatgagtcaaggtaaatggatcaagt |
25912637 |
T |
|
| Q |
192 |
aaagtaaatgttttggcaaccctagtacaaataacaataggaccaatatttggacctaaagaagcagcaatattactaggcagaataatcaaatccccgc |
291 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |||||||||||||||||| || ||||||||||||| |||| |||||||| ||||||||||| || |
|
|
| T |
25912638 |
aaagtaaatgttttggcaaccctagtgcaaatgacaataggaccaatatttacactgaaagaagcagcaacattaggaggcagaaaaatcaaatcccagc |
25912737 |
T |
|
| Q |
292 |
agcaaattgggacgatttcaacagaaaaa |
320 |
Q |
| |
|
|| |||| ||||||||||||||| ||||| |
|
|
| T |
25912738 |
agaaaatggggacgatttcaacaaaaaaa |
25912766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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