View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5645_high_9 (Length: 263)
Name: NF5645_high_9
Description: NF5645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5645_high_9 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 153; Significance: 4e-81; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 85 - 257
Target Start/End: Original strand, 26736624 - 26736796
Alignment:
| Q |
85 |
agcctctcgacaacttgactcatggtgggtctaacatctttatcttcctgtacacaatccaatgcaacatttgccaaagtttccattctctttgcatcat |
184 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26736624 |
agcctctcaacaacttgactcatggtgggtctaacatctttatcttcctgtacacaatccaatgcaacatttgccaaagtttccattctctttgcatcat |
26736723 |
T |
|
| Q |
185 |
aatttgatcccaatgcagggtcaacaatttcttcaacccaacaaccaacttctaatccttttcttcttctctc |
257 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||| |||| |
|
|
| T |
26736724 |
aatttgatcccaatgcagggtcaacaatttcttcaacccaacaagcaacttctagtacttttcttcttttctc |
26736796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 85 - 257
Target Start/End: Original strand, 26713388 - 26713560
Alignment:
| Q |
85 |
agcctctcgacaacttgactcatggtgggtctaacatctttatcttcctgtacacaatccaatgcaacatttgccaaagtttccattctctttgcatcat |
184 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26713388 |
agcctctcaacaacttgacttatggtgggtctaacatctttctcttcctgtacacaatccaatgcaacatttgccaaagtttccattctctttgcatcat |
26713487 |
T |
|
| Q |
185 |
aatttgatcccaatgcagggtcaacaatttcttcaacccaacaaccaacttctaatccttttcttcttctctc |
257 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||| |||| |
|
|
| T |
26713488 |
aatttgatcccaatgcagggtcaacaatttcttcaacccaacaaccaacttctagtactttttttcttttctc |
26713560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 51 - 257
Target Start/End: Original strand, 26743601 - 26743807
Alignment:
| Q |
51 |
taatgaatagccttaattatggtcatcccttaatagcctctcgacaacttgactcatggtgggtctaacatctttatcttcctgtacacaatccaatgca |
150 |
Q |
| |
|
||||| ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||| |
|
|
| T |
26743601 |
taatggatagccttaattatgctcatcccttaatagcctctcaacaacttgactcatggtgggtctaacatctttctcttcctttacacaatccaaagca |
26743700 |
T |
|
| Q |
151 |
acatttgccaaagtttccattctctttgcatcataatttgatcccaatgcagggtcaacaatttcttcaacccaacaaccaacttctaatccttttcttc |
250 |
Q |
| |
|
|||| ||||||||| ||||| ||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
26743701 |
acatctgccaaagtctccatcttctttacatcataatttgatcccaatttagggtcaacaatttgctcaacccaacaaccaacttctaatccttttcttc |
26743800 |
T |
|
| Q |
251 |
ttctctc |
257 |
Q |
| |
|
|| |||| |
|
|
| T |
26743801 |
ttttctc |
26743807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 64 - 252
Target Start/End: Original strand, 26750539 - 26750727
Alignment:
| Q |
64 |
taattatggtcatcccttaatagcctctcgacaacttgactcatggtgggtctaacatctttatcttcctgtacacaatccaatgcaacatttgccaaag |
163 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||| | |
|
|
| T |
26750539 |
taatcatggtcatcccttaatagcctctcaacaacttgactcatggtaggtctaacatctttatcttcttgtacacaatccaaagcaacatttgccaatg |
26750638 |
T |
|
| Q |
164 |
tttccattctctttgcatcataatttgatcccaatgcagggtcaacaatttcttcaacccaacaaccaacttctaatccttttcttctt |
252 |
Q |
| |
|
| ||||| ||||| |||||||||||||||||||| ||||| ||||||| | | ||||||||||||||||||| ||||||||||||| |
|
|
| T |
26750639 |
tctccatcttctttacatcataatttgatcccaattttgggtctacaatttgtgccacccaacaaccaacttctactccttttcttctt |
26750727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 85 - 252
Target Start/End: Original strand, 26733399 - 26733566
Alignment:
| Q |
85 |
agcctctcgacaacttgactcatggtgggtctaacatctttatcttcctgtacacaatccaatgcaacatttgccaaagtttccattctctttgcatcat |
184 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26733399 |
agcctctcaacaacttgactcatggtgggtctaacatctttctcttcagccacacaatccaaagcaacatttgccaaagtttccattctctttgcatcat |
26733498 |
T |
|
| Q |
185 |
aatttgatcccaatgcagggtcaacaatttcttcaacccaacaaccaacttctaatccttttcttctt |
252 |
Q |
| |
|
|||||||||||||| ||||||| ||||||| |||||||||||||||| || |||||||||||||| |
|
|
| T |
26733499 |
aatttgatcccaatttagggtcagcaatttcctcaacccaacaaccaaatttagatccttttcttctt |
26733566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 85 - 232
Target Start/End: Original strand, 26698236 - 26698383
Alignment:
| Q |
85 |
agcctctcgacaacttgactcatggtgggtctaacatctttatcttcctgtacacaatccaatgcaacatttgccaaagtttccattctctttgcatcat |
184 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26698236 |
agcctctcaacaacttgactcatggtgggtctaacatctttctcttcagacacacaatccaaagcaacatttgccaaagtttccattctctttgcatcat |
26698335 |
T |
|
| Q |
185 |
aatttgatcccaatgcagggtcaacaatttcttcaacccaacaaccaa |
232 |
Q |
| |
|
|||||||||||||| ||||||| ||||||| |||||||||||||||| |
|
|
| T |
26698336 |
aatttgatcccaatttagggtcagcaatttcctcaacccaacaaccaa |
26698383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 85 - 189
Target Start/End: Original strand, 26691986 - 26692090
Alignment:
| Q |
85 |
agcctctcgacaacttgactcatggtgggtctaacatctttatcttcctgtacacaatccaatgcaacatttgccaaagtttccattctctttgcatcat |
184 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||||||| ||||| ||||||||||| |||||||||| |||||||||||||||||||||||||| |
|
|
| T |
26691986 |
agcctctcaacaacttgactcatggtaggtctaacatctttttcttcagccacacaatccaaagcaacatttgtcaaagtttccattctctttgcatcat |
26692085 |
T |
|
| Q |
185 |
aattt |
189 |
Q |
| |
|
||||| |
|
|
| T |
26692086 |
aattt |
26692090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 85 - 258
Target Start/End: Original strand, 26675021 - 26675194
Alignment:
| Q |
85 |
agcctctcgacaacttgactcatggtgggtctaacatctttatcttcctgtacacaatccaatgcaacatttgccaaagt-ttccatt-ctctttgcatc |
182 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| |||| || |||||||||||| || || |||||| || ||| ||| | || || |
|
|
| T |
26675021 |
agcctctcaacaacttgactcatggtgggtctaacatctttctctttctctacacaatccaaagccaccactgccaaggtcttcaattgaacaatg--tc |
26675118 |
T |
|
| Q |
183 |
ataatttgatcccaatgcagggtcaacaatttcttcaacccaacaaccaacttctaatccttttcttcttctctct |
258 |
Q |
| |
|
||||||| ||||||||||||||||||| |||| ||||| |||||| || |||||| || |||| |||||| ||||| |
|
|
| T |
26675119 |
ataatttaatcccaatgcagggtcaactatttgttcaatccaacatcccacttctgattctttccttcttttctct |
26675194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 227
Target Start/End: Original strand, 18658185 - 18658297
Alignment:
| Q |
115 |
ctaacatctttatcttcctgtacacaatccaatgcaacatttgccaaagtttccattctctttgcatcataatttgatcccaatgcagggtcaacaattt |
214 |
Q |
| |
|
|||| |||| ||||||||| |||||||||||| ||||| || |||||| |||||| | ||| |||| |||| | |||| |||||| || | ||||| |
|
|
| T |
18658185 |
ctaatatctctatcttcctctacacaatccaaagcaactttagccaaaacttccatcttatttaaatcacaattggtccccattgcaggatccataattt |
18658284 |
T |
|
| Q |
215 |
cttcaacccaaca |
227 |
Q |
| |
|
||||||||||||| |
|
|
| T |
18658285 |
cttcaacccaaca |
18658297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University