View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5645_low_12 (Length: 236)

Name: NF5645_low_12
Description: NF5645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5645_low_12
NF5645_low_12
[»] chr3 (10 HSPs)
chr3 (1-222)||(26736745-26736966)
chr3 (1-222)||(26713509-26713730)
chr3 (1-222)||(26743756-26743977)
chr3 (45-222)||(26750725-26750902)
chr3 (45-222)||(26698401-26698578)
chr3 (45-222)||(26733564-26733741)
chr3 (100-222)||(26675244-26675366)
chr3 (45-222)||(26694876-26695053)
chr3 (45-222)||(26732026-26732203)
chr3 (122-222)||(26690715-26690815)
[»] chr7 (5 HSPs)
chr7 (115-217)||(21130219-21130321)
chr7 (115-178)||(21111259-21111322)
chr7 (117-217)||(18658383-18658483)
chr7 (110-217)||(21108501-21108608)
chr7 (110-217)||(21098882-21098989)
[»] chr4 (1 HSPs)
chr4 (126-217)||(39132415-39132506)


Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 26736745 - 26736966
Alignment:
Q  1 caacaatttcttcaacccaacaagcaacttctagtacnnnnnnncttttctccctaacccatgttaccaacctctcatgatacaactcttctttgtcttt 100  Q
    |||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  26736745 caacaatttcttcaacccaacaagcaacttctagtacttttcttcttttctccctaacccatgttaccaatctctcatgatacaactcttctttgtcttt 26736844  T
Q  101 gatttggatacctgttgttggactctttccggtaatcatctccaacaccacaactccatagctataaacatccacttttgaagtaatttgcatgttgaaa 200  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  26736845 gatttggatacctgttgttggactctttcctgtaatcatctccaacaccacaactccatagctataaacatccacttttgaagtgatttgcatgttgaaa 26736944  T
Q  201 acccattcaggtgccatgtaac 222  Q
    ||||||||||||||||||||||    
T  26736945 acccattcaggtgccatgtaac 26736966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 26713509 - 26713730
Alignment:
Q  1 caacaatttcttcaacccaacaagcaacttctagtacnnnnnnncttttctccctaacccatgttaccaacctctcatgatacaactcttctttgtcttt 100  Q
    ||||||||||||||||||||||| |||||||||||||       |||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  26713509 caacaatttcttcaacccaacaaccaacttctagtactttttttcttttctccctaacccatgttaccaatctctcatgatacaactcttctttgtcttt 26713608  T
Q  101 gatttggatacctgttgttggactctttccggtaatcatctccaacaccacaactccatagctataaacatccacttttgaagtaatttgcatgttgaaa 200  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  26713609 gatttggataccagttgttggactctttccggtaatcatctccaacaccacaactccatagctataaacatccacttttgaagtgatttgcatgttgaaa 26713708  T
Q  201 acccattcaggtgccatgtaac 222  Q
    ||||||||||||||||||||||    
T  26713709 acccattcaggtgccatgtaac 26713730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 26743756 - 26743977
Alignment:
Q  1 caacaatttcttcaacccaacaagcaacttctagtacnnnnnnncttttctccctaacccatgttaccaacctctcatgatacaactcttctttgtcttt 100  Q
    |||||||||  |||||||||||| ||||||||| | |       |||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  26743756 caacaatttgctcaacccaacaaccaacttctaatccttttcttcttttctccctaacccatgttaccaacctctcatgacacaactcttctttgtcttt 26743855  T
Q  101 gatttggatacctgttgttggactctttccggtaatcatctccaacaccacaactccatagctataaacatccacttttgaagtaatttgcatgttgaaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |||| ||||||||||    
T  26743856 gatttggatacctgttgttggactctttccggtaatcatctccaacacaacgactccatagctataaacatccacttttgaagtgatttccatgttgaaa 26743955  T
Q  201 acccattcaggtgccatgtaac 222  Q
    ||||| ||||||||||||||||    
T  26743956 acccactcaggtgccatgtaac 26743977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 45 - 222
Target Start/End: Original strand, 26750725 - 26750902
Alignment:
Q  45 cttttctccctaacccatgttaccaacctctcatgatacaactcttctttgtctttgatttggatacctgttgttggactctttccggtaatcatctcca 144  Q
    ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26750725 cttttttccctaacccatgttaccaacctctcatgacacaactcttctttgtctttgatttggatacctgttgttggactctttccggtaatcatctcca 26750824  T
Q  145 acaccacaactccatagctataaacatccacttttgaagtaatttgcatgttgaaaacccattcaggtgccatgtaac 222  Q
    |||| || ||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  26750825 acacaacgactccatagctataaacgtccactttagaagtgatttgcatgttgaaaacccattcaggtgccatgtaac 26750902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 45 - 222
Target Start/End: Original strand, 26698401 - 26698578
Alignment:
Q  45 cttttctccctaacccatgttaccaacctctcatgatacaactcttctttgtctttgatttggatacctgttgttggactctttccggtaatcatctcca 144  Q
    ||||| ||||||||||||||| |||| ||||||| | | || ||||||   |||||| || | |||| ||||||||||| ||| || ||||| |||||||    
T  26698401 cttttttccctaacccatgttgccaagctctcatcacaaaagtcttctccatctttgtttggtatacttgttgttggacccttaccagtaattatctcca 26698500  T
Q  145 acaccacaactccatagctataaacatccacttttgaagtaatttgcatgttgaaaacccattcaggtgccatgtaac 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26698501 acaccacaactccatagctataaacatccacttttgaagtaatttgcatgttgaaaacccattcaggtgccatgtaac 26698578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 45 - 222
Target Start/End: Original strand, 26733564 - 26733741
Alignment:
Q  45 cttttctccctaacccatgttaccaacctctcatgatacaactcttctttgtctttgatttggatacctgttgttggactctttccggtaatcatctcca 144  Q
    ||||| ||||||||||||||| | || ||||||| | | || ||||||   |||||| || | |||| ||||||||||| ||| || ||||| |||||||    
T  26733564 cttttttccctaacccatgtttctaagctctcatcacaaaagtcttctccatctttgtttggtatacttgttgttggacccttaccagtaattatctcca 26733663  T
Q  145 acaccacaactccatagctataaacatccacttttgaagtaatttgcatgttgaaaacccattcaggtgccatgtaac 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26733664 acaccacaactccatagctataaacatccacttttgaagtaatttgcatgttgaaaacccattcaggtgccatgtaac 26733741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 100 - 222
Target Start/End: Original strand, 26675244 - 26675366
Alignment:
Q  100 tgatttggatacctgttgttggactctttccggtaatcatctccaacaccacaactccatagctataaacatccacttttgaagtaatttgcatgttgaa 199  Q
    |||||| |||||  || ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| || || ||||| ||| ||| ||||||    
T  26675244 tgatttcgatacaggtcgttggactctttccggtaatcatctccaacaccacaattccataactataaacatctaccttggaagtgattggcaagttgaa 26675343  T
Q  200 aacccattcaggtgccatgtaac 222  Q
    || ||||||||||||||||||||    
T  26675344 aatccattcaggtgccatgtaac 26675366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 45 - 222
Target Start/End: Complemental strand, 26695053 - 26694876
Alignment:
Q  45 cttttctccctaacccatgttaccaacctctcatgatacaactcttctttgtctttgatttggatacctgttgttggactctttccggtaatcatctcca 144  Q
    |||||||| || |||||||||||||| ||||||| ||    || ||||  |||| |||||  |||||| ||  ||| |||||| |||||||||||||| |    
T  26695053 cttttctctctcacccatgttaccaaactctcattatgagtcttttctccgtctgtgattaagatacccgtcattgcactcttcccggtaatcatctcta 26694954  T
Q  145 acaccacaactccatagctataaacatccacttttgaagtaatttgcatgttgaaaacccattcaggtgccatgtaac 222  Q
     || |||||||||||||||||||||||| || || ||||| ||| ||| |||||||| |||||||||| |||||||||    
T  26694953 gcagcacaactccatagctataaacatctaccttggaagtgattggcaagttgaaaatccattcaggtcccatgtaac 26694876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 45 - 222
Target Start/End: Complemental strand, 26732203 - 26732026
Alignment:
Q  45 cttttctccctaacccatgttaccaacctctcatgatacaactcttctttgtctttgatttggatacctgttgttggactctttccggtaatcatctcca 144  Q
    |||||||| || |||||||||||||| ||||||| ||    || ||||   ||| |||||  ||||| |||  ||| |||||| |||||||||||||| |    
T  26732203 cttttctctctcacccatgttaccaaactctcattatgagtcttttctccatctgtgattaagatacttgtcattgcactcttcccggtaatcatctcta 26732104  T
Q  145 acaccacaactccatagctataaacatccacttttgaagtaatttgcatgttgaaaacccattcaggtgccatgtaac 222  Q
     || |||||||||||||||||||||||| || || ||||| ||| ||| |||||||| ||||||||||||||||||||    
T  26732103 gcagcacaactccatagctataaacatctaccttggaagtgattggcaagttgaaaatccattcaggtgccatgtaac 26732026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 122 - 222
Target Start/End: Complemental strand, 26690815 - 26690715
Alignment:
Q  122 actctttccggtaatcatctccaacaccacaactccatagctataaacatccacttttgaagtaatttgcatgttgaaaacccattcaggtgccatgtaa 221  Q
    |||||| || ||||||||||| | || |||||||||||||||||||||||| || || ||||| ||| ||| |||||||| |||||||||||||||||||    
T  26690815 actcttcccagtaatcatctctagcagcacaactccatagctataaacatctaccttggaagtgattggcaagttgaaaatccattcaggtgccatgtaa 26690716  T
Q  222 c 222  Q
    |    
T  26690715 c 26690715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 115 - 217
Target Start/End: Original strand, 21130219 - 21130321
Alignment:
Q  115 ttgttggactctttccggtaatcatctccaacaccacaactccatagctataaacatccacttttgaagtaatttgcatgttgaaaacccattcaggtgc 214  Q
    ||||||||||||||||||| |||||||| ||||| ||||| || || ||||||||||||||||| || || ||| | |  ||||||| ||| ||||||||    
T  21130219 ttgttggactctttccggttatcatctctaacacgacaaccccgtaactataaacatccactttagatgttattggtaaattgaaaatccactcaggtgc 21130318  T
Q  215 cat 217  Q
    |||    
T  21130319 cat 21130321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 115 - 178
Target Start/End: Original strand, 21111259 - 21111322
Alignment:
Q  115 ttgttggactctttccggtaatcatctccaacaccacaactccatagctataaacatccacttt 178  Q
    ||||||||||||||||||| ||||| |||||||  ||||| ||||| |||||||||||||||||    
T  21111259 ttgttggactctttccggttatcatatccaacaaaacaaccccataactataaacatccacttt 21111322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 117 - 217
Target Start/End: Original strand, 18658383 - 18658483
Alignment:
Q  117 gttggactctttccggtaatcatctccaacaccacaactccatagctataaacatccacttttgaagtaatttgcatgttgaaaacccattcaggtgcca 216  Q
    |||||||||||||| || |||||||||||||  ||||| ||||| | ||||||||||||||| || || ||| |||  ||||||| ||| ||||| ||||    
T  18658383 gttggactctttccagttatcatctccaacaatacaaccccataaccataaacatccactttagatgttattggcaaattgaaaatccactcaggggcca 18658482  T
Q  217 t 217  Q
    |    
T  18658483 t 18658483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 217
Target Start/End: Complemental strand, 21108608 - 21108501
Alignment:
Q  110 acctgttgttggactctttccggtaatcatctccaacaccacaactccatagctataaacatccacttttgaagtaatttgcatgttgaaaacccattca 209  Q
    |||||| |||||||| ||||| || ||||| ||||| || || | |||||| |||||||||||||| || || || ||| |||  ||||||| |||||||    
T  21108608 acctgtagttggactttttcctgttatcatttccaaaacaactattccataactataaacatccaccttagatgttattggcaaattgaaaatccattca 21108509  T
Q  210 ggtgccat 217  Q
    ||||||||    
T  21108508 ggtgccat 21108501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 110 - 217
Target Start/End: Complemental strand, 21098989 - 21098882
Alignment:
Q  110 acctgttgttggactctttccggtaatcatctccaacaccacaactccatagctataaacatccacttttgaagtaatttgcatgttgaaaacccattca 209  Q
    |||||| |||||||| ||||| || ||||| ||||| || || | |||||||||||||||||| ||||| || || ||| |||  ||||||| ||||||     
T  21098989 acctgtagttggactttttcctgttatcatttccaatacaactattccatagctataaacatctactttagatgttattggcaaattgaaaatccattct 21098890  T
Q  210 ggtgccat 217  Q
    || |||||    
T  21098889 ggggccat 21098882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 217
Target Start/End: Complemental strand, 39132506 - 39132415
Alignment:
Q  126 tttccggtaatcatctccaacaccacaactccatagctataaacatccacttttgaagtaatttgcatgttgaaaacccattcaggtgccat 217  Q
    ||||| || |||||||||||||  ||||  ||||| ||||||||||||||||| || || ||| | |  ||||||||||||||||| |||||    
T  39132506 tttccagttatcatctccaacaaaacaatcccataactataaacatccactttagatgttattggtaaattgaaaacccattcaggagccat 39132415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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