View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5645_low_13 (Length: 234)
Name: NF5645_low_13
Description: NF5645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5645_low_13 |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 16 - 234
Target Start/End: Complemental strand, 36993202 - 36992984
Alignment:
| Q |
16 |
ttaatgccggtatcactttcccaagaagtgggagacaaacaccaattgcacttgcaactaatattgacactaaagccgctattttgtagcgtagagcttt |
115 |
Q |
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| T |
36993202 |
ttaatgccggtatcactttcccaagaagtgggagacaaacaccaattgcacttgcaactaatattgacactaaagccgctattttgtagcgtagagcttt |
36993103 |
T |
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| Q |
116 |
tgatctgtccctttcttcatcttcttcgtcacatgtgcactctgcagctattagagttgggactataaagagaatgaagatcgaaagaacaaagagtttg |
215 |
Q |
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| T |
36993102 |
tgatctgtccctttcttcatcttcttcgtcacatgtgcactctgcagctattagagttgggactataaagagaatgaagatcgaaagaacaaagagtttg |
36993003 |
T |
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| Q |
216 |
aatcccatttcaatggtta |
234 |
Q |
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||||||||||||||||||| |
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| T |
36993002 |
aatcccatttcaatggtta |
36992984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 16 - 234
Target Start/End: Complemental strand, 37018642 - 37018424
Alignment:
| Q |
16 |
ttaatgccggtatcactttcccaagaagtgggagacaaacaccaattgcacttgcaactaatattgacactaaagccgctattttgtagcgtagagcttt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37018642 |
ttaatgccggtatcactttcccaagaagtgggagacaaacaccaattgcacttgcaactaatattgacactaaagccgctattttgtagcgtagagcttt |
37018543 |
T |
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| Q |
116 |
tgatctgtccctttcttcatcttcttcgtcacatgtgcactctgcagctattagagttgggactataaagagaatgaagatcgaaagaacaaagagtttg |
215 |
Q |
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| T |
37018542 |
tgatctgtccctttcttcatcttcttcgtcacatgtgcactctgcagctattagagttgggactataaagagaatgaagatcgaaagaacaaagagtttg |
37018443 |
T |
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| Q |
216 |
aatcccatttcaatggtta |
234 |
Q |
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| T |
37018442 |
aatcccatttcaatggtta |
37018424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 16 - 177
Target Start/End: Complemental strand, 36955521 - 36955360
Alignment:
| Q |
16 |
ttaatgccggtatcactttcccaagaagtgggagacaaacaccaattgcacttgcaactaatattgacactaaagccgctattttgtagcgtagagcttt |
115 |
Q |
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|||| |||||||| ||||| ||||||||||||| | ||||||||||||||||| ||||||| |||||||||||||| ||||||||||| |||| ||||| |
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| T |
36955521 |
ttaacgccggtattactttgccaagaagtgggataaaaacaccaattgcacttacaactaaaattgacactaaagctgctattttgtaacgtaaggcttt |
36955422 |
T |
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| Q |
116 |
tgatctgtccctttcttcatcttcttcgtcacatgtgcactctgcagctattagagttggga |
177 |
Q |
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| T |
36955421 |
ggctttgtctctatcttcatcttcctcatcacatgtgcattctgcggctattagagttggga |
36955360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 16 - 183
Target Start/End: Complemental strand, 36938809 - 36938642
Alignment:
| Q |
16 |
ttaatgccggtatcactttcccaagaagtgggagacaaacaccaattgcacttgcaactaatattgacactaaagccgctattttgtagcgtagagcttt |
115 |
Q |
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|||| |||||||||||||| ||||||||||| | ||||||||||||| ||||||||||||||||||| |||||||| ||||| || || || |||||||| |
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| T |
36938809 |
ttaacgccggtatcactttgccaagaagtggaatacaaacaccaattccacttgcaactaatattgatactaaagctgctatcttataacgaagagcttt |
36938710 |
T |
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| Q |
116 |
tgatctgtccctttcttcatcttcttcgtcacatgtgcactctgcagctattagagttgggactataa |
183 |
Q |
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| T |
36938709 |
gggtttgtctctatctaaatcttcttcatcacacgtgcattcggcggctattagagtcgggattataa |
36938642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 16 - 172
Target Start/End: Complemental strand, 36951034 - 36950878
Alignment:
| Q |
16 |
ttaatgccggtatcactttcccaagaagtgggagacaaacaccaattgcacttgcaactaatattgacactaaagccgctattttgtagcgtagagcttt |
115 |
Q |
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|||| |||||||||||||| || |||||||| | ||||||||||||| |||||||||||| |||||| |||||||| ||||| || || || || ||||| |
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| T |
36951034 |
ttaacgccggtatcactttgcctagaagtggaatacaaacaccaattccacttgcaactagtattgatactaaagctgctatcttataacgaagggcttt |
36950935 |
T |
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| Q |
116 |
tgatctgtccctttcttcatcttcttcgtcacatgtgcactctgcagctattagagt |
172 |
Q |
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||| |||| || ||||||||||||| || |||||||| ||||| ||||||||||| |
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| T |
36950934 |
ggatttgtctctatcttcatcttctttatcgcatgtgcattctgcggctattagagt |
36950878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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