View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5645_low_2 (Length: 567)
Name: NF5645_low_2
Description: NF5645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5645_low_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 145; Significance: 5e-76; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 18 - 166
Target Start/End: Original strand, 36739412 - 36739560
Alignment:
| Q |
18 |
aacatggccatgtatattttgaaaacaagttagcatagcatcggagcgtagacacataaatttgatgctagaaattccttgaatattaataatttaagag |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36739412 |
aacatggccatgtatattttgaaaacaagttagcatagcatcggagcgtagacacataaatttgatgctagaaattccttgaatattaataatttaagag |
36739511 |
T |
|
| Q |
118 |
gtatcataaaattaaatatttattttcggaaaaagtacaactctataat |
166 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
36739512 |
gtatcataaaattaaatatttattttcggaaaaagtacaacactataat |
36739560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 18 - 300
Target Start/End: Complemental strand, 39180805 - 39180534
Alignment:
| Q |
18 |
aacatggccatgtatattttgaaaacaagttagcatagcatcggagcgtagacacataaatttgatgctagaaattccttgaatattaataatttaagag |
117 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| || || ||||||||||| ||||||| |||||||||| ||||||||||||| ||||| |
|
|
| T |
39180805 |
aacacggccatgtatattttgaaaacaagttagcat-gc----gaacgtagacacat----ttgatgccagaaattcctcaaatattaataatt-aagag |
39180716 |
T |
|
| Q |
118 |
gtatcataaaattaaatatttattttcggaaaaagtacaactctataatattgatttaaccgagttaagttgttctgcattcgtaaattcatgattggat |
217 |
Q |
| |
|
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||| |||| |||||| | |||||||| |
|
|
| T |
39180715 |
gtaacataaaattaaatatttattttccgaaaaagtacaactctataatattgatttaaccgattcaagttgttctgaattcataaatttaagattggat |
39180616 |
T |
|
| Q |
218 |
ataagtatgttcctctccatgcttgctcaaagtctctaactttccaatgaatgtatccatgacatcaaatatgaaaattgaat |
300 |
Q |
| |
|
||||| |||||| |||||||||||||||||||| | || | |||||| |||||||||||| ||||||||||||||||||||| |
|
|
| T |
39180615 |
ataagcatgttcatctccatgcttgctcaaagt-tgcaaatctccaataaatgtatccatggcatcaaatatgaaaattgaat |
39180534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 308 - 379
Target Start/End: Original strand, 17730735 - 17730810
Alignment:
| Q |
308 |
taactatataggaaaattaatacatg--tttttccccattttaccctccttg-gggtatttt-gtaattcaataat |
379 |
Q |
| |
|
||||||||||||||||||||| |||| |||| |||||||| ||||||||| || |||||| ||||||||||||| |
|
|
| T |
17730735 |
taactatataggaaaattaattcatgatctttttcccatttttccctccttgaggttattttggtaattcaataat |
17730810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University