View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5645_low_3 (Length: 435)
Name: NF5645_low_3
Description: NF5645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5645_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 377; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 19 - 395
Target Start/End: Complemental strand, 44865514 - 44865138
Alignment:
| Q |
19 |
tagataagctcagataagacaattaaagcagaccctagtaacaaagaggggggttgtttgctttgttagtcaagcatttgactgacccttgatgtacaaa |
118 |
Q |
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| T |
44865514 |
tagataagctcagataagacaattaaagcagaccctagtaacaaagaggggggttgtttgctttgttagtcaagcatttgactgacccttgatgtacaaa |
44865415 |
T |
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| Q |
119 |
cttaattatgtttgagtgaatgctctccttaaaatattaatgtactagattttactgaactcttaattatttcagggtgccaaatgcgaaacctggaaga |
218 |
Q |
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| T |
44865414 |
cttaattatgtttgagtgaatgctctccttaaaatattaatgtactagattttactgaactcttaattatttcagggtgccaaatgcgaaacctggaaga |
44865315 |
T |
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| Q |
219 |
gagagtacagaaattgaaatatacggaatgcaggggattccgccagatgtcttggctgctcattatggagatgaaggttacactatactctgtctcattg |
318 |
Q |
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| T |
44865314 |
gagagtacagaaattgaaatatacggaatgcaggggattccgccagatgtcttggctgctcattatggagatgaaggttacactatactctgtctcattg |
44865215 |
T |
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| Q |
319 |
ttttttctccttgtttcatagttcttattgatagtttatactcgagacaccttaataactactacaagtacaaacaa |
395 |
Q |
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| T |
44865214 |
ttttttctccttgtttcatagttcttattgatagtttatactcgagacaccttaataactactacaagtacaaacaa |
44865138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 363 - 423
Target Start/End: Complemental strand, 44865138 - 44865078
Alignment:
| Q |
363 |
agacaccttaataactactacaagtacaaacaaatctgattttttacctctgtttgatgat |
423 |
Q |
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| T |
44865138 |
agacaccttaataactactacaagtacaaacaaatctgattttttacctctgtttaatgat |
44865078 |
T |
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