View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5645_low_6 (Length: 377)
Name: NF5645_low_6
Description: NF5645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5645_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 367
Target Start/End: Complemental strand, 55950608 - 55950242
Alignment:
| Q |
1 |
tttggatgtgaacctgatgatgttacatattcggttatgattgactcttatggaaaggctggggatattgatatggctttgaacttgtatgatcgtgcta |
100 |
Q |
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| T |
55950608 |
tttggatgtgaaccggatgatgttacatattcggttatgattgactcttatggaaaggctggggatattgatatggctttgaacttgtatgatcgtgcta |
55950509 |
T |
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| Q |
101 |
ggactgagaaatggcgtattgagcctgcgacgttctctacgttgattaagatgtatggggtggcagggaattatgatggatgcttgaatgtttatgagga |
200 |
Q |
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| T |
55950508 |
ggactgagaaatggcgtattgagcctgcgacgttctctacgttgattaagatgtatggggtggcagggaattatgatggatgcttgaatgtttatgagga |
55950409 |
T |
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| Q |
201 |
aatgaaggctcttggtgttaagcctaacttggttgtttataacactcttttggatgccatgggtagagctaagaggccatggcaggccaggactatatat |
300 |
Q |
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| T |
55950408 |
aatgaaggctcttggtgttaagcctaacttggttgtttataacactcttttggatgccatgggtagagctaagaggccatggcaggccaggactatatat |
55950309 |
T |
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| Q |
301 |
aaagagatgataaataatgacattttgccgaatcgagcaacttatgcgtctctcttacatgcctatg |
367 |
Q |
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| T |
55950308 |
aaagagatgataaataatgacattttgccgaatcgagcaacttatgcgtctctcttacatgcctatg |
55950242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 276
Target Start/End: Complemental strand, 9663962 - 9663754
Alignment:
| Q |
68 |
ttgatatggctttgaacttgtatgatcgtgctaggactgagaaatggcgtattgagcctgcgacgttctctacgttgattaagatgtatggggtggcagg |
167 |
Q |
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| T |
9663962 |
ttgatatggctttgaaattgtatgatagtgcgaaaaatgagaaatgggttattaggccagttgcgttttcggctttgattaagatgtatgggatattggg |
9663863 |
T |
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| Q |
168 |
gaattatgatggatgcttgaatgtttatgaggaaatgaaggctcttggtgttaagcctaacttggttgtttataacactcttttggatgccatgggtaga |
267 |
Q |
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| T |
9663862 |
gaattatgatgggtgtttgagtgtttataatgatatgaaagttcttggtgttaggccgaatatggttttgtataatgctttgttgtatgctatggggaga |
9663763 |
T |
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| Q |
268 |
gctaagagg |
276 |
Q |
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| T |
9663762 |
gctaagagg |
9663754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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