View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5645_low_7 (Length: 319)
Name: NF5645_low_7
Description: NF5645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5645_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 5663377 - 5663077
Alignment:
| Q |
1 |
acatgattctcataagcagtttatagtaacatgttagcaatatcagcatagaagaaaactattataacaacagtagtataataacaggaggaagatgaag |
100 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |||||||| |
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| T |
5663377 |
acatgattctcataagcagattatagtaacatgttagcaatatcagcacagaagaaaactattataacaacagtagtataataacagaa---agatgaag |
5663281 |
T |
|
| Q |
101 |
aagttataacccaaggcagcagaacataactactggctcgtgagtaccaaat-tgacaggaaatggaggagaacgtgaagctaatgt--ctttaactact |
197 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||| || |
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| T |
5663280 |
aagttataaaccaaggcagcagaacataactactggctcgtgagtaccaaaactgacaggaaatggaggagaatgtgaagctaatgtgtctttaacttct |
5663181 |
T |
|
| Q |
198 |
tgtgagaagcgaccatggtcttaccggtgacagaagcttcgaagtcggagcgagatacaccgtcaacaatgaattcaatcttgctaatacaattacctgg |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
5663180 |
tgtgagaagcgaccatggtcttaccggtgacagaagcttcgaagtcggagcgagatacaccataaacaatgaattcaatcttgctaatacaattacctgg |
5663081 |
T |
|
| Q |
298 |
atgc |
301 |
Q |
| |
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|||| |
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| T |
5663080 |
atgc |
5663077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 116; Significance: 5e-59; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 111 - 301
Target Start/End: Complemental strand, 52131504 - 52131316
Alignment:
| Q |
111 |
ccaaggcagcagaacataactactggctcgtgagtaccaaattgacaggaaatggaggagaacgtgaagcta-atg-tctttaactacttgtgagaagcg |
208 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||| ||| ||||| ||| ||||||||||||| |
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| T |
52131504 |
ccaaggcagcagaacataact----tctcgtgagtaccaaattgacaggaaatggaggataacgtgacgctacatgttctttgacttcttgtgagaagcg |
52131409 |
T |
|
| Q |
209 |
accatggtcttaccggtgacagaagcttcgaagtcggagcgagatacaccgtcaacaatgaattcaatcttgctaatacaattacctggatgc |
301 |
Q |
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| T |
52131408 |
accatggtcttaccgatgacagaagcttcgaaatcggattgagatacaccgtcaataataaattcaatcttgctaatacaattacctggatgc |
52131316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 99; Significance: 7e-49; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 199 - 301
Target Start/End: Original strand, 11649155 - 11649257
Alignment:
| Q |
199 |
gtgagaagcgaccatggtcttaccggtgacagaagcttcgaagtcggagcgagatacaccgtcaacaatgaattcaatcttgctaatacaattacctgga |
298 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11649155 |
gtgagaagcgaccatggtcttaccgatgacagaagcttcgaagtcggagcgagatacaccgtcaacaatgaattcaatcttgctaatacaattacctgga |
11649254 |
T |
|
| Q |
299 |
tgc |
301 |
Q |
| |
|
||| |
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|
| T |
11649255 |
tgc |
11649257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 144 - 301
Target Start/End: Complemental strand, 22007884 - 22007721
Alignment:
| Q |
144 |
gtaccaaattgacaggaaatggaggagaa----cgtgaagcta-atgt-ctttaactacttgtgagaagcgaccatggtcttaccggtgacagaagcttc |
237 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||| |||| |||||||| ||||||| |||||||||||||||| || ||||||||| || |
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| T |
22007884 |
gtaccaaattgacaggaaatggaggagaatcaacgtgaagctacatgttctttaacttcttgtgaaaagcgaccatggtcttgacgatgacagaagtttt |
22007785 |
T |
|
| Q |
238 |
gaagtcggagcgagatacaccgtcaacaatgaattcaatcttgctaatacaattacctggatgc |
301 |
Q |
| |
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||||||| |||||||||||||| |||||||||||||| |||| ||||||| ||| |||||||| |
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| T |
22007784 |
gaagtcgaagcgagatacaccgccaacaatgaattcagtcttcgtaatacacttatctggatgc |
22007721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 144
Target Start/End: Original strand, 11649126 - 11649159
Alignment:
| Q |
111 |
ccaaggcagcagaacataactactggctcgtgag |
144 |
Q |
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||||||||||||||||||||| |||||||||||| |
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|
| T |
11649126 |
ccaaggcagcagaacataactgctggctcgtgag |
11649159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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