View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5645_low_8 (Length: 296)
Name: NF5645_low_8
Description: NF5645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5645_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 15 - 275
Target Start/End: Original strand, 55950586 - 55950846
Alignment:
| Q |
15 |
acatcatcaggttcacatccaaacaacggcatcttttcaaaccactccacagctttttcaggcaaataacaagacctagcacaactaattatagtcgaaa |
114 |
Q |
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| T |
55950586 |
acatcatccggttcacatccaaacaacggcatcttttcaaaccactccacagctttatcaggcaaataacaagacctagcacaactaattatagtcgaaa |
55950685 |
T |
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| Q |
115 |
aagtaacattatcaggcttcacacctctctgaagcatttcaccaaacaccttctctgcaccatccaaatccttacactttctaaacaccttaagggtaac |
214 |
Q |
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| T |
55950686 |
aagtaacattatcaggcttcacacctctctgaagcatttcaccaaacaccttctctgcaccatccaaatccttacactttctaaacaccttaagggtaac |
55950785 |
T |
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| Q |
215 |
attgtaaagaattacctccctagtgggtatgctcttcctttgaacatactgaagaacaaaa |
275 |
Q |
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| T |
55950786 |
attgtaaagaattacctccctagtgggtatgctcttcctttgaacatactgaagaacaaaa |
55950846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 93 - 190
Target Start/End: Original strand, 9674201 - 9674298
Alignment:
| Q |
93 |
gcacaactaattatagtcgaaaaagtaacattatcaggcttcacacctctctgaagcatttcaccaaacaccttctctgcaccatccaaatccttaca |
190 |
Q |
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| T |
9674201 |
gcacaattaatcatagtagtaaaagtaatattatccggcttaacccctctttgaagcatttcatcaaaaaccttctgtgcaccatcaaaatcattaca |
9674298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 92 - 173
Target Start/End: Original strand, 9649872 - 9649953
Alignment:
| Q |
92 |
agcacaactaattatagtcgaaaaagtaacattatcaggcttcacacctctctgaagcatttcaccaaacaccttctctgca |
173 |
Q |
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| T |
9649872 |
agcacaagtaatcatcgtcgaaaacgtaacaacattaggcttcacccctctttgaagcatttcatcaaacagtttctctgca |
9649953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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