View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5645_low_9 (Length: 276)
Name: NF5645_low_9
Description: NF5645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5645_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 50454118 - 50453855
Alignment:
| Q |
1 |
tacattggcaactttaaaatgatgtctgcattttgtgtaaatgtaggctaaaattcttttggacagacactaatatattacacagcatattgcattgaaa |
100 |
Q |
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| T |
50454118 |
tacattggcaactttaaaatgatgtctgcattttgtgtaaatgcaggctaaaattcttttggacagacactaatatattacacagcatattgcattgaaa |
50454019 |
T |
|
| Q |
101 |
caaataattatgtaatgttagattggttgttaaactttgaaaatggaaatagaatagctgaatgaattgatcttatttattgatagctagaatacttgaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50454018 |
caaataattatgtaatgttagattggttgttaaactttgaaaatggaaatagaatagctgaatgaattgatcttatttattgatagctagaatacttgaa |
50453919 |
T |
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| Q |
201 |
gtgcgcatattttcttagcaatattccccaatcccttgattgtaaatatagatggtgcacaggt |
264 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |
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| T |
50453918 |
gtgcgcatattttcttagcaatattccccaatcccttgattgtaaatatagacggtgcataggt |
50453855 |
T |
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