View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5646-Insertion-5 (Length: 877)
Name: NF5646-Insertion-5
Description: NF5646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5646-Insertion-5 |
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Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-136; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-136
Query Start/End: Original strand, 7 - 349
Target Start/End: Original strand, 23891326 - 23891669
Alignment:
| Q |
7 |
aatacattcaactattaatgaattagttagataaataatcatgtgattgatactcctgtatgtgtcttcttgcctgaaaacaattatttatccattgtta |
106 |
Q |
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| T |
23891326 |
aatacattcaactattaatgaattagttagataaataataatgtgattgatactcctggatgtgtcttcttgcctgaaaacaattatttatccattgtta |
23891425 |
T |
|
| Q |
107 |
gttgcgatgtttcgataacagttcacatttgtaggcttatagcca-nnnnnnnnctacgctaagtcaaaatttcatctgtttttgttttgttgtttaaat |
205 |
Q |
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| T |
23891426 |
gttgcgatgtttcgataacagttcacatttgtaggcttatagccatttttttttctacgctaagtaaagattttatctgtttttgttttgttgttgaatt |
23891525 |
T |
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| Q |
206 |
gaattagatagttgtgacatatgattttttataagatcaaatgctgagttagtgttttttctttatatagcttatgtttaagtgaagtagaatatcaann |
305 |
Q |
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| T |
23891526 |
gaattagatagttgtgacatgtgattttttataagatcaaatgttaagttagtgttttttctttatatagcttatttttaagtgaagtagaatatcaatt |
23891625 |
T |
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| Q |
306 |
nnnnncctgatacatgaaatcaaaggtcctatatataattgtta |
349 |
Q |
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| T |
23891626 |
tttttcctgatacatgaaatcaaaggtcctatatataattgtta |
23891669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 381 - 471
Target Start/End: Original strand, 23891679 - 23891769
Alignment:
| Q |
381 |
aagtttaatgctaactgcaaattatgcagatattttgagcaaattttcatctttaatgtcatatgtccannnnnnnctaagtcccttactt |
471 |
Q |
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| T |
23891679 |
aagtttaatgctaactgcaaattatgcagatattttgagcaaattttcatctttaatgtcatatgtccatttttctctaagtcccttactt |
23891769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 836 - 869
Target Start/End: Original strand, 23891765 - 23891798
Alignment:
| Q |
836 |
tactttcctttatctgaattttccccccactttc |
869 |
Q |
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| T |
23891765 |
tactttcctttatctggattttccccccactttc |
23891798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 70; Significance: 4e-31; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 525 - 634
Target Start/End: Original strand, 34706284 - 34706393
Alignment:
| Q |
525 |
tgagattaatatcagttcaagttttaaattctaaaatgatatatacatgtttcaaatgtaagctgaatatattactgtttgtactttcattttgattgaa |
624 |
Q |
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|||| ||||||| |||||| |||||| |||||||||||||||||| ||| ||||||||||||||||||||||| | |||||| |||||||||||||||| |
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| T |
34706284 |
tgaggttaatataagttcaggttttatattctaaaatgatatataaatggttcaaatgtaagctgaatatatttcaatttgtaatttcattttgattgaa |
34706383 |
T |
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| Q |
625 |
aaagtaaatt |
634 |
Q |
| |
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|||||||||| |
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| T |
34706384 |
aaagtaaatt |
34706393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 323 - 403
Target Start/End: Original strand, 34706068 - 34706148
Alignment:
| Q |
323 |
aatcaaaggtcctatatataattgttacagatttaaggaaaactatgcaggtagatataagtttaatgctaactgcaaatt |
403 |
Q |
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| T |
34706068 |
aatcaaaggtcctatttataattgctatagatttaaggaaaactatgcaggtaggtgcaagttgactgctacctgcaaatt |
34706148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 2e-30; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 506 - 634
Target Start/End: Original strand, 4358395 - 4358522
Alignment:
| Q |
506 |
catgatgttttcgaaataatgagattaatatcagttcaagttttaaattctaaaatgatatatacatgtttcaaatgtaagctgaatatattactgtttg |
605 |
Q |
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||||||||||| |||| | |||| ||||||| ||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||| | || |||| |
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| T |
4358395 |
catgatgttttggaaa-attgaggttaatataagttcaagttttatattctaaaatgatatattaatggttcaaatgtaagctgaatatacttctatttg |
4358493 |
T |
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| Q |
606 |
tactttcattttgattgaaaaagtaaatt |
634 |
Q |
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| |||||||||||||||||||||||||| |
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| T |
4358494 |
aaatttcattttgattgaaaaagtaaatt |
4358522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 322 - 403
Target Start/End: Original strand, 4358193 - 4358274
Alignment:
| Q |
322 |
aaatcaaaggtcctatatataattgttacagatttaaggaaaactatgcaggtagatataagtttaatgctaactgcaaatt |
403 |
Q |
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||||||||||||||||||||||||| || |||||||||||||||||||||||||| | ||||||| ||| | ||||||||| |
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| T |
4358193 |
aaatcaaaggtcctatatataattgctatagatttaaggaaaactatgcaggtaggtgcaagtttactgccatctgcaaatt |
4358274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 1e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 31 - 151
Target Start/End: Original strand, 1558008 - 1558128
Alignment:
| Q |
31 |
agttagataaataatcatgtgattgatactcctgtatgtgtcttcttgcctgaaaacaattatttatccattgttagttgcgatgtttcgataacagttc |
130 |
Q |
| |
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||||| ||||| ||| |||||||||||| | ||| ||||| |||||||| | |||| |||||||||||||||||| |||||||||| ||||||||||| |
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| T |
1558008 |
agttaaataaacaataatgtgattgataatactgagtgtgtgttcttgccagcaaaccattatttatccattgttatttgcgatgttccgataacagttt |
1558107 |
T |
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| Q |
131 |
acatttgtaggcttatagcca |
151 |
Q |
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| T |
1558108 |
acatttgtcggcttatagcca |
1558128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 4e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 556 - 634
Target Start/End: Original strand, 45033154 - 45033232
Alignment:
| Q |
556 |
taaaatgatatatacatgtttcaaatgtaagctgaatatattactgtttgtactttcattttgattgaaaaagtaaatt |
634 |
Q |
| |
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|||| ||||||||||||| |||||||||||||| ||||| || ||||||||| |||||||||||||||||||||||||| |
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| T |
45033154 |
taaattgatatatacatggttcaaatgtaagctaaatatgtttctgtttgtaatttcattttgattgaaaaagtaaatt |
45033232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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