View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5646_high_2 (Length: 271)
Name: NF5646_high_2
Description: NF5646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5646_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 7542138 - 7541878
Alignment:
| Q |
1 |
ttgcttatagctagtagtat--tatgacccgagtttgcatttatgcatatttcttttactatattttgccattttaaaattctcttgatgtaaaatgaga |
98 |
Q |
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| T |
7542138 |
ttgcttatagctcgtagtatactatgacccgagtttgcatttatgcatatttcttttactatattttgccattttaaaattctcttgatgtaaaatgaga |
7542039 |
T |
|
| Q |
99 |
tgtttataagcttgacaatggcaattggtataagattttgtgtgtccattaagaattagcattatgtaacaatataata---aagcatgcacatgagagt |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
7542038 |
agtttataagcttgacaatggcaattggtataagattttgtgtgtccattaagaattagcattatgtaacaatataataattaagcatgcacatgagagt |
7541939 |
T |
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| Q |
196 |
tttatataactaatttatttggacatcaatgtacgtattagtgatttatttgtcggattgat |
257 |
Q |
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|||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
7541938 |
tttatatacctaa-ttatttggacatcaatgtataacttagtgatttatttgtcggattgat |
7541878 |
T |
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