View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5647-Insertion-1 (Length: 226)
Name: NF5647-Insertion-1
Description: NF5647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5647-Insertion-1 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 8 - 226
Target Start/End: Original strand, 4839586 - 4839803
Alignment:
| Q |
8 |
atatcttccttgttggcctctggtgggtttggagacatcgtaatttgatgtgccttaacaacaagacttgctcactttttcgtcttaattctaatatttt |
107 |
Q |
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| T |
4839586 |
atatcttccttgttggcctctggtgggtttggagacatcgtaatttgatgtgccttaacaacaagacttgctcactttttcgtcttaattctaatatttt |
4839685 |
T |
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| Q |
108 |
tagttctgctgagtccatcaccttgagctttcaacacgagagaagtgcttcttgtacaaattgcctaattaaatcgaataacaacaatcatatttgttcc |
207 |
Q |
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| T |
4839686 |
-agttctgctgaatccatcaccttgagctttcaacacgagagaagtgctgcttgtacaaattgcctaattaaatcgaataacaacaatcatatttgttcc |
4839784 |
T |
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| Q |
208 |
attctcaatgttgatggga |
226 |
Q |
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| T |
4839785 |
atactcaatgttgatggga |
4839803 |
T |
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Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 38880364 - 38880410
Alignment:
| Q |
19 |
gttggcctctggtgggtttggagacatcgtaatttgatgtgccttaa |
65 |
Q |
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| T |
38880364 |
gttggcctttggtgggtttggagacatcgtaacttaatgtgccttaa |
38880410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 65
Target Start/End: Original strand, 721142 - 721186
Alignment:
| Q |
21 |
tggcctctggtgggtttggagacatcgtaatttgatgtgccttaa |
65 |
Q |
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| T |
721142 |
tggcctttggtgggtttggagacatcgtaacttaatgtgacttaa |
721186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 65
Target Start/End: Original strand, 37145266 - 37145303
Alignment:
| Q |
28 |
tggtgggtttggagacatcgtaatttgatgtgccttaa |
65 |
Q |
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| T |
37145266 |
tggtgggtttggagacatcgtaacttaatgtgccttaa |
37145303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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