View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5647-Insertion-2 (Length: 585)

Name: NF5647-Insertion-2
Description: NF5647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5647-Insertion-2
NF5647-Insertion-2
[»] scaffold0227 (1 HSPs)
scaffold0227 (122-585)||(2386-2828)
[»] chr7 (4 HSPs)
chr7 (29-128)||(35442872-35442971)
chr7 (47-107)||(35291021-35291081)
chr7 (174-254)||(35748155-35748235)
chr7 (186-254)||(35741769-35741837)
[»] chr5 (3 HSPs)
chr5 (131-293)||(16866242-16866404)
chr5 (30-90)||(4742119-4742179)
chr5 (30-90)||(4751383-4751443)
[»] chr8 (7 HSPs)
chr8 (131-293)||(40010229-40010391)
chr8 (125-297)||(10863203-10863375)
chr8 (120-295)||(10902488-10902663)
chr8 (411-467)||(10863060-10863116)
chr8 (29-107)||(22257507-22257585)
chr8 (48-93)||(5748097-5748142)
chr8 (365-466)||(10902338-10902439)
[»] chr1 (1 HSPs)
chr1 (48-107)||(16450938-16450997)


Alignment Details
Target: scaffold0227 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 122 - 585
Target Start/End: Original strand, 2386 - 2828
Alignment:
Q  122 taagaaagtatagggtattcatggtcacctctataaatagttccgcaaggttagaagcacttttgagtacactaacaatatacaatagttctcctctttc 221  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  2386 taagaaagtatagggtattcatggtcacctctataaatagttcaacaaggttagaagcacttttgagtacactaacaatataatatagttctcctctttc 2485  T
Q  222 atccaaattcaccgaattcaatttcagatactttaagctaatcaactgtgacggaggaatgatatctgcatagagcgtctacacaataacaacaaagcaa 321  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  || |||||||||  |||||||||||||    
T  2486 atccaaattcaccgaattcaatttcagatactttaagctaatcaactgtgacggaggaatgatatctgcat--agtgtctacacataaacaacaaagcaa 2583  T
Q  322 tgaaatataattataccacacgcacacttcaagtaacacagttttcaatgtaagtatcggaaacattggattcaaccatcaataaaatccaacattgctt 421  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2584 tgaaatataattataccacacacacacttcaagtaacacagttttcaatgtaagtatcggaaacattggattcaaccatcaataaaatccaacattgctt 2683  T
Q  422 ctctttcaaatatacaataaaagataactttaaaagatcaaactgcaaggtcaagggcaggctagatagaagtgattccagaaacaagcaaactgagatt 521  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||                    ||||||||||||||||||||||| |||||||    
T  2684 ctctttcaaatacacaataaaagataactttaaaagatcaaactgcaag-------------------taagtgattccagaaacaagcaaattgagatt 2764  T
Q  522 ggataatttaaagtaacattataccatgtattaaatttttatttaacttgtgttttatttttgc 585  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  2765 ggataatttaaagtaacattataccatgtattaaacttttatttaacttgtgttttatttttgc 2828  T

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Target: chr7 (Bit Score: 96; Significance: 9e-47; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 29 - 128
Target Start/End: Complemental strand, 35442971 - 35442872
Alignment:
Q  29 attaatgaagtagtcaaagtgattaatgagatatatgttaaataagttgttaataacatatatttttgtggttaatgaaaaagtgagagtggttaagaaa 128  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  35442971 attaatgaagtagtcaaagtgattaatgagatatatgttaaataagttgttaataacatatatttttgtggttaatgaaatagtgagagtggttaagaaa 35442872  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 47 - 107
Target Start/End: Complemental strand, 35291081 - 35291021
Alignment:
Q  47 gtgattaatgagatatatgttaaataagttgttaataacatatatttttgtggttaatgaa 107  Q
    ||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||    
T  35291081 gtgattaataagatatatgttaaataattagttaataacatatatttttgtggttaatgaa 35291021  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 174 - 254
Target Start/End: Original strand, 35748155 - 35748235
Alignment:
Q  174 agaagcacttttgagtacactaacaatatacaatagttctcctctttcatccaaattcaccgaattcaatttcagatactt 254  Q
    |||||||| || |||| |||||||||||||||| ||||||||||| ||||  ||||||||   |  |||||||||||||||    
T  35748155 agaagcacattggagtgcactaacaatatacaaaagttctcctctatcattgaaattcacattacccaatttcagatactt 35748235  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 186 - 254
Target Start/End: Original strand, 35741769 - 35741837
Alignment:
Q  186 gagtacactaacaatatacaatagttctcctctttcatccaaattcaccgaattcaatttcagatactt 254  Q
    |||| |||||||||||||||| ||||||||||| ||||  ||||||||   |  |||||||||||||||    
T  35741769 gagtgcactaacaatatacaaaagttctcctctatcattgaaattcacattacccaatttcagatactt 35741837  T

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Target: chr5 (Bit Score: 95; Significance: 3e-46; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 131 - 293
Target Start/End: Complemental strand, 16866404 - 16866242
Alignment:
Q  131 atagggtattcatggtcacctctataaatagttccgcaaggttagaagcacttttgagtacactaacaatatacaatagttctcctctttcatccaaatt 230  Q
    |||||||||||||||||||||||||||  |||||| | |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||    
T  16866404 atagggtattcatggtcacctctataacaagttccaccaggttagaagcacttttgagtacactaacaatatacaaaagttcttctctttcatccaaatt 16866305  T
Q  231 caccgaattcaatttcagatactttaagctaatcaactgtgacggaggaatgatatctgcata 293  Q
    |||   ||  |||||||||||||| ||||  |||| |||||| ||| ||||||||||||||||    
T  16866304 cacgcgatctaatttcagatacttcaagcctatcagctgtgatggatgaatgatatctgcata 16866242  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 30 - 90
Target Start/End: Original strand, 4742119 - 4742179
Alignment:
Q  30 ttaatgaagtagtcaaagtgattaatgagatatatgttaaataagttgttaataacatata 90  Q
    ||||| ||||| |||||||| ||||||| ||||||| |||| |||| ||||||||||||||    
T  4742119 ttaattaagtaatcaaagtggttaatgaaatatatggtaaaaaagtggttaataacatata 4742179  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 30 - 90
Target Start/End: Original strand, 4751383 - 4751443
Alignment:
Q  30 ttaatgaagtagtcaaagtgattaatgagatatatgttaaataagttgttaataacatata 90  Q
    ||||| ||||| |||||||| ||||||| ||||||| |||| |||| ||||||||||||||    
T  4751383 ttaattaagtaatcaaagtggttaatgaaatatatggtaaaaaagtggttaataacatata 4751443  T

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Target: chr8 (Bit Score: 87; Significance: 2e-41; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 131 - 293
Target Start/End: Original strand, 40010229 - 40010391
Alignment:
Q  131 atagggtattcatggtcacctctataaatagttccgcaaggttagaagcacttttgagtacactaacaatatacaatagttctcctctttcatccaaatt 230  Q
    |||||||||||||||||||||| ||||  |||||  | |||||||||||||||||||||||||||||||||| ||| |||||| |||||  |||||||||    
T  40010229 atagggtattcatggtcacctccataacaagttcgaccaggttagaagcacttttgagtacactaacaatatgcaaaagttcttctcttcgatccaaatt 40010328  T
Q  231 caccgaattcaatttcagatactttaagctaatcaactgtgacggaggaatgatatctgcata 293  Q
    |||   ||| |||||||||||||||||||| |||| |||||| ||| ||||||||||||||||    
T  40010329 cacgatatttaatttcagatactttaagcttatcagctgtgatggatgaatgatatctgcata 40010391  T

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Target: chr8; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 125 - 297
Target Start/End: Complemental strand, 10863375 - 10863203
Alignment:
Q  125 gaaagtatagggtattcatggtcacctctataaatagttccgcaaggttagaagcacttttgagtacactaacaatatacaatagttctcctctttcatc 224  Q
    ||||| ||| |||||| |||||||||| ||||   |||||| | |||||||||||||||||||||||||||||||||||||| | ||||||||| ||||     
T  10863375 gaaagaataaggtatttatggtcacctgtatagtaagttccaccaggttagaagcacttttgagtacactaacaatatacaaaacttctcctctgtcatt 10863276  T
Q  225 caaattcaccgaattcaatttcagatactttaagctaatcaactgtgacggaggaatgatatctgcatagagc 297  Q
    || |||||  | |   |||| ||||||||||||||| ||||||||||| ||| ||||||||||||||||||||    
T  10863275 catattcaaggtaaataattccagatactttaagcttatcaactgtgatggatgaatgatatctgcatagagc 10863203  T

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Target: chr8; HSP #3
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 120 - 295
Target Start/End: Complemental strand, 10902663 - 10902488
Alignment:
Q  120 gttaagaaagtatagggtattcatggtcacctctataaatagttccgcaaggttagaagcacttttgagtacactaacaatatacaatagttctcctctt 219  Q
    |||||||||| ||| |||||| || ||||||| ||||   |||||| | |||||||||||||||||||||||||||||||||| ||| | |||||||||     
T  10902663 gttaagaaagaataaggtatttattgtcacctgtatatcaagttccaccaggttagaagcacttttgagtacactaacaatatccaaaacttctcctctg 10902564  T
Q  220 tcatccaaattcaccgaattcaatttcagatactttaagctaatcaactgtgacggaggaatgatatctgcataga 295  Q
    ||||||| |||||  |  || |||||||||||||||| ||| ||||||| ||| ||| ||||||||||||||||||    
T  10902563 tcatccatattcaaggcttttaatttcagatactttacgcttatcaactatgatggatgaatgatatctgcataga 10902488  T

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Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 411 - 467
Target Start/End: Complemental strand, 10863116 - 10863060
Alignment:
Q  411 caacattgcttctctttcaaatatacaataaaagataactttaaaagatcaaactgc 467  Q
    |||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||    
T  10863116 caacgttgcttctctttcaaacatacaataaaagataagtttaaaagatcaaactgc 10863060  T

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Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 29 - 107
Target Start/End: Complemental strand, 22257585 - 22257507
Alignment:
Q  29 attaatgaagtagtcaaagtgattaatgagatatatgttaaataagttgttaataacatatatttttgtggttaatgaa 107  Q
    ||||||||||||||||||||||||||||||||| |||||||| || |   |  ||||||||| ||||||||||||||||    
T  22257585 attaatgaagtagtcaaagtgattaatgagatacatgttaaaaaactgactgctaacatataattttgtggttaatgaa 22257507  T

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Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 48 - 93
Target Start/End: Complemental strand, 5748142 - 5748097
Alignment:
Q  48 tgattaatgagatatatgttaaataagttgttaataacatatattt 93  Q
    |||||||||||||||||||||||||||| |||||||||||| ||||    
T  5748142 tgattaatgagatatatgttaaataagtggttaataacatacattt 5748097  T

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Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 365 - 466
Target Start/End: Complemental strand, 10902439 - 10902338
Alignment:
Q  365 ttcaatgtaagtatcggaaacattggattcaaccatcaataaaa-tccaacattgcttctctttcaaatatacaataaaagataactttaaaagatcaaa 463  Q
    |||||||||| ||  ||||| |||||||| |||||| || |||| | |||||||||||||  |||||||||||| |||||||||| ||||| |||| |||    
T  10902439 ttcaatgtaaatactggaaa-attggattgaaccataaaaaaaagtacaacattgcttcttcttcaaatatacagtaaaagataaatttaagagataaaa 10902341  T
Q  464 ctg 466  Q
    |||    
T  10902340 ctg 10902338  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 48 - 107
Target Start/End: Original strand, 16450938 - 16450997
Alignment:
Q  48 tgattaatgagatatatgttaaataagttgttaataacatatatttttgtggttaatgaa 107  Q
    |||||||||||||||||||||||||| | |||||| || || ||||| ||| ||||||||    
T  16450938 tgattaatgagatatatgttaaataactagttaatgacttacattttagtgcttaatgaa 16450997  T

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