View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5647_high_4 (Length: 241)
Name: NF5647_high_4
Description: NF5647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5647_high_4 |
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| [»] scaffold1112 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 101; Significance: 3e-50; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 107 - 222
Target Start/End: Original strand, 6325299 - 6325419
Alignment:
| Q |
107 |
cataaattgttctaaagcaagctacac-----atacccattttacttgttttattgaatggtttcaaacgtattaaaccacaaaagtgcctcgtctttta |
201 |
Q |
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| T |
6325299 |
cataaattgttctaaagcaagctacacaacacatacccattttacttgttttattgaatggtttcaaacgtattaaaccacaaaagtgcctcgtctttta |
6325398 |
T |
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| Q |
202 |
tcatatgttgacaaataaaat |
222 |
Q |
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| T |
6325399 |
tcatatgttgacaaataaaat |
6325419 |
T |
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Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 110 - 183
Target Start/End: Original strand, 6345764 - 6345838
Alignment:
| Q |
110 |
aaattgttctaaagcaagctacacataccca-ttttacttgttttattgaatggtttcaaacgtattaaaccaca |
183 |
Q |
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| T |
6345764 |
aaattgttctaaagcaagctacccatacccaattttacttggtttattgaagggtttcaaacgtattaaaccaca |
6345838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 110 - 214
Target Start/End: Original strand, 6330384 - 6330490
Alignment:
| Q |
110 |
aaattgttctaaagcaagctacacatacccattttacttgttttattgaatggtttcaaacgtattaaa--ccacaaaagtgcctcgtcttttatcatat |
207 |
Q |
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| T |
6330384 |
aaattgttctaaagcaacctatgcatatcgattttacttgttttgttgaagggttttaaacgtattaaatcacacacaaacgcgtcatcttttatcatat |
6330483 |
T |
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| Q |
208 |
gttgaca |
214 |
Q |
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| T |
6330484 |
gttgaca |
6330490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1112 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold1112
Description:
Target: scaffold1112; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 110 - 183
Target Start/End: Complemental strand, 588 - 515
Alignment:
| Q |
110 |
aaattgttctaaagcaagctacacatacccattttacttgttttattgaatggtttcaaacgtattaaaccaca |
183 |
Q |
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| T |
588 |
aaattgttctaaagcaagctccacgtatcgattttacttgttttattgatgggtttcaaaggtattaaaccaca |
515 |
T |
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