View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5647_low_1 (Length: 394)
Name: NF5647_low_1
Description: NF5647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5647_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 141 - 381
Target Start/End: Complemental strand, 55060688 - 55060447
Alignment:
| Q |
141 |
ggaaatctgtttatgaatcaagaacatggtttggtgaaatattggctactaa-gagttctgttgattgtgatgttgttatagttgttcctgattgtggtg |
239 |
Q |
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| T |
55060688 |
ggaaatctgtttatgaatcaagaagatggtttggtgaaatattggctactaaagagtcctgttgattgtgatgttgttatagttgttcctgattttggtg |
55060589 |
T |
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| Q |
240 |
ttgttgctgcacttggttatgctgcaaaagttggtgttccttttcaacagggtttgattaggtcacactatgttggtagaactttcattgagccatcaca |
339 |
Q |
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| T |
55060588 |
ttgttgctgcacttggttatgctgcaaaagctggtgttccttttcaacagggtttgattaggccacactatgttggtagaactttcattgagccatcaca |
55060489 |
T |
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| Q |
340 |
gaagattagagattttggtgtgaagttgaagctttcgccggt |
381 |
Q |
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| T |
55060488 |
gaagattagagattttggtgtgaagttgaagctttcgccggt |
55060447 |
T |
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Target: chr3; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 20 - 90
Target Start/End: Complemental strand, 55060811 - 55060741
Alignment:
| Q |
20 |
ctggtgagattgtggttgtggataaaagtggtgttcaatctcattgtcttgtttctcgtccagaaccaaaa |
90 |
Q |
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| T |
55060811 |
ctggtgagattgtggttgtggataaaagtggtgttcaatctcattgtcttgtttctcgtccagaaccaaaa |
55060741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 122; Significance: 2e-62; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 185 - 378
Target Start/End: Complemental strand, 27356828 - 27356635
Alignment:
| Q |
185 |
gctactaagagttctgttgattgtgatgttgttatagttgttcctgattgtggtgttgttgctgcacttggttatgctgcaaaagttggtgttccttttc |
284 |
Q |
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| T |
27356828 |
gctactgagagtcctgttgattgtgatgttgtgatagctgttcctgattctggtgttgtggctgctcttggttatgctgcgaaagctggtgttccttttc |
27356729 |
T |
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| Q |
285 |
aacagggtttgattaggtcacactatgttggtagaactttcattgagccatcacagaagattagagattttggtgtgaagttgaagctttcgcc |
378 |
Q |
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| T |
27356728 |
agcaagggttgattaggtcacactatgtaggaaggactttcattgagccatctcagaaaattagggattttggtgtgaagttgaagctttcgcc |
27356635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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