View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5647_low_3 (Length: 270)
Name: NF5647_low_3
Description: NF5647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5647_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 19 - 262
Target Start/End: Original strand, 11423841 - 11424084
Alignment:
| Q |
19 |
agcacgtggcctgaactatctccattttgacagagctgttcctcatgggaaccttaaagctacaaatgtgttgttagatacagctgatatgaatgcacgt |
118 |
Q |
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| T |
11423841 |
agcacgtggcctgaactatctccattttgacagagctgttcctcatgggaaccttaaagctacaaatgtgttgttagatacagctgatatgaatgcacgt |
11423940 |
T |
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| Q |
119 |
gtcgctgattattgtcttcaccgacttatgactcaagctggtactattgagcagattcttgacgccggtgtcttaggttatcgcgcaccagagttagctg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11423941 |
gtcgctgattattgtcttcaccgacttatgactcaagctggtactattgagcagattcttgacgccggtgtcttaggttatcgcgcaccagagttagctg |
11424040 |
T |
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| Q |
219 |
cttccaagaagccaatgccttccttcaagtcagatgcctatgct |
262 |
Q |
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| T |
11424041 |
cttccaagaagccaatgccttctttcaagtcagatgtctatgct |
11424084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 19 - 254
Target Start/End: Complemental strand, 32304712 - 32304478
Alignment:
| Q |
19 |
agcacgtggcctgaactatctccattttgacagagctgttcctcatgggaaccttaaagctacaaatgtgttgttagatacagctgatatgaatgcacgt |
118 |
Q |
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||||||||||||||||||||||||||| ||| ||||||| ||||| || |||||||||||||||||||||||||||||||| || | |||||||||| || |
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| T |
32304712 |
agcacgtggcctgaactatctccatttcgaccgagctgtccctcaaggaaaccttaaagctacaaatgtgttgttagataccgcgggtatgaatgcatgt |
32304613 |
T |
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| Q |
119 |
gtcgctgattattgtcttcaccgacttatgactcaagctggtactattgagcagattcttgacgccggtgtcttaggttatcgcgcaccagagttagctg |
218 |
Q |
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| T |
32304612 |
gttgttgattattgtcttcatcgacttatgactcaggct-atactattgaacagattcttgatgcttgtgtcttaggttatcacgttccggagttaactg |
32304514 |
T |
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| Q |
219 |
cttccaagaagccaatgccttccttcaagtcagatg |
254 |
Q |
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| T |
32304513 |
cttccaagaagacaatgccttccttcaagtcagatg |
32304478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 19 - 254
Target Start/End: Complemental strand, 9323282 - 9323045
Alignment:
| Q |
19 |
agcacgtggcctgaactatctccattttgacagagctgttcctcatgggaaccttaaag-ctacaaatgtgttgttagatacagctgatatgaatgcacg |
117 |
Q |
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||||||||| |||| |||||||||||| ||| |||||||||||||||| ||||||||| || ||||||||||||||||||| ||||||||||||||| |
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| T |
9323282 |
agcacgtggactga-ctatctccatttcgaccgagctgttcctcatggaaaccttaaaatctgcaaatgtgttgttagataccactgatatgaatgcact |
9323184 |
T |
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| Q |
118 |
tgtcgctgattattgtcttcaccgacttatgactcaagctggt---actattgagcagattcttgacgccggtgtcttaggttatcgcgcaccagagtta |
214 |
Q |
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|| || |||||||||||| ||||||||||||||||||||||| |||||||| ||||| | ||||||||||||||| |||||| |||||| |
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| T |
9323183 |
ggttgc-gattattgtcttgaccgacttatgactcaagctggtactactattgaatagattttctcttatggtgtcttaggttattgcgcacacgagtta |
9323085 |
T |
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| Q |
215 |
gctgcttccaagaagccaatgccttccttcaagtcagatg |
254 |
Q |
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|||||||| ||||||||||||||||||||||||||||||| |
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| T |
9323084 |
gctgcttcaaagaagccaatgccttccttcaagtcagatg |
9323045 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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