View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5647_low_5 (Length: 215)
Name: NF5647_low_5
Description: NF5647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5647_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 18 - 198
Target Start/End: Complemental strand, 13718546 - 13718367
Alignment:
| Q |
18 |
acaaatagtccccacattgaatacttgtgaaaaacaaaggagaacactatctataaaaccagaaatgtatgagaatgaaatatcaattttggatttgagg |
117 |
Q |
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| T |
13718546 |
acaaatagtccc-acattgaatacttgtgaaaaacaaaggagaacactatctataaaaccagaaatgtatgagaatgaaatatcaatttcggatttgagg |
13718448 |
T |
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| Q |
118 |
ttactacgcgtcttcattgtccagcgtaaagtcatcatccattgtcctcattaatggccatttacatctttctatttggtt |
198 |
Q |
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| T |
13718447 |
ttactacgcgtcttcattgtccagcgtaaagtcatcatccattgtcctcattaatgggcatttacatctttctatttggtt |
13718367 |
T |
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Target: chr2 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 18 - 181
Target Start/End: Complemental strand, 27322433 - 27322275
Alignment:
| Q |
18 |
acaaatagtccccacattgaatacttgtgaaaaacaaaggagaacactatctataaaaccagaaatgtatgagaatgaaatatcaattttggatttgagg |
117 |
Q |
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||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||| |||||| |||||||| || || ||||||| |||||||||| |
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| T |
27322433 |
acaaatagtccg-acatcgaatacttgtgaaaaacagaggagaacactatctataaaagcagaaacgtatgagactggaacatcaattccggatttgagg |
27322335 |
T |
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| Q |
118 |
ttactacgcgtcttcattgtccagcgtaaagtcatcatccattgtcctcattaatggccattta |
181 |
Q |
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|||| || ||||||| |||||||||||| ||||||||| ||||| ||||||| |||||| |
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| T |
27322334 |
----tacgtgttttcattggtcagcgtaaagtcctcatccattatcctcgttaatgggcattta |
27322275 |
T |
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