View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5648_low_1 (Length: 228)
Name: NF5648_low_1
Description: NF5648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5648_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 179; Significance: 9e-97; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 12106198 - 12106415
Alignment:
| Q |
1 |
ttatctcttttatgtagagcgccgaagaaaacaaagaagtgagcagcatacccagaaattcaaaggaaaattgcataatcatgtagtgtgtgctataatt |
100 |
Q |
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| T |
12106198 |
ttatctcttttatgtagagcgccgaagaaaacaaagaagtgagcagcatacccagaaattcaaaggaaaattgcataatcatgtagtgtgtgctataatt |
12106297 |
T |
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| Q |
101 |
atgttcaatgctaactagccnnnnnnnnngttggtttcaaatttgtttaataagtataaacttatttcttgctaactttatactatacctatttattggt |
200 |
Q |
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| T |
12106298 |
atgttcaatgctaactagcctttttttttgttggtttcaaatttgttttataagtataaacttatttcttgctaactttatattatacctatttgttggt |
12106397 |
T |
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| Q |
201 |
ttgtgttttggacctttg |
218 |
Q |
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| T |
12106398 |
ttgtgttttggacctttg |
12106415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 22 - 218
Target Start/End: Original strand, 12094762 - 12094961
Alignment:
| Q |
22 |
ccgaagaaaacaaagaagtgagcagcatacccagaaattcaaaggaaaattgcataatcatgtagtgtgtgctataattatgttcaatgctaactagcc- |
120 |
Q |
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| T |
12094762 |
ccgaagaaaaccaagaagtgagaagcataaccagaaaatcaaaggaaaagtgcataatcatgtagtgtgtgctataatagtgttcaatgctaaccagcct |
12094861 |
T |
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| Q |
121 |
--nnnnnnnnngttggtttcaaatttgtttaataagtataaacttatttcttgctaactttatactatacctatttattggtttgtgttttggacctttg |
218 |
Q |
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| T |
12094862 |
catttttttttgttggtttcgactttattttataagtataaacttatttcttgcgaactttatattatacctatttgttggtttgtgttttggacctttg |
12094961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 10675891 - 10675824
Alignment:
| Q |
1 |
ttatctcttttatgtagagcgccgaagaaaacaaagaagtgagcagcatacccagaaattcaaaggaa |
68 |
Q |
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| T |
10675891 |
ttatctcttttatgtagagcgccgaagagaaccaagaagtgagcagcataccaagaaattcaaaggaa |
10675824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 142 - 210
Target Start/End: Complemental strand, 1454505 - 1454437
Alignment:
| Q |
142 |
tttgtttaataagtataaacttatttcttgctaactttatactatacctatttattggtttgtgttttg |
210 |
Q |
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| T |
1454505 |
tttgttttattagtataaacttatttcttgctaactttctattataccgatttgttagtttgtgttttg |
1454437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 68
Target Start/End: Complemental strand, 1458808 - 1458744
Alignment:
| Q |
2 |
tatctcttttatgtagagcgccgaagaaaacaaagaagtgagcagcatacccagaaattcaaaggaa |
68 |
Q |
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| T |
1458808 |
tatctcttttatgcagagcgc--aaaaagaccaagaactgagcatcatacccagaaattcaaaggaa |
1458744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 71 - 118
Target Start/End: Complemental strand, 10675803 - 10675756
Alignment:
| Q |
71 |
ttgcataatcatgtagtgtgtgctataattatgttcaatgctaactag |
118 |
Q |
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| T |
10675803 |
ttgcatgatcatgtagtgtgtgctataattgtgttgagtgctaactag |
10675756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 26592435 - 26592475
Alignment:
| Q |
18 |
agcgccgaagaaaacaaagaagtgagcagcatacccagaaa |
58 |
Q |
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| T |
26592435 |
agcgccgaagaaaaccaagaagtgagcagcatatccagaaa |
26592475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 68
Target Start/End: Complemental strand, 12155725 - 12155667
Alignment:
| Q |
10 |
ttatgtagagcgccgaagaaaacaaagaagtgagcagcatacccagaaattcaaaggaa |
68 |
Q |
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|||||||||||||| |||||||| ||||| | | || |||||| ||||||||||||||| |
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| T |
12155725 |
ttatgtagagcgccaaagaaaaccaagaattaaacatcataccaagaaattcaaaggaa |
12155667 |
T |
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