View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5649-Insertion-2 (Length: 1069)
Name: NF5649-Insertion-2
Description: NF5649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5649-Insertion-2 |
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Alignment Details
Target: chr1 (Bit Score: 380; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 6 - 454
Target Start/End: Complemental strand, 1135711 - 1135262
Alignment:
| Q |
6 |
caggtccaaccttttggacatgctataagtctaattctcgattcgacaacaacccatcagattttttaccaggacagtactgcctctcaaatagacgagc |
105 |
Q |
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| T |
1135711 |
caggtccaaccttttggacatgttataagtctaattctcgagtcgacaacaacccatcagattttttatcag-acagtactacctctcaaatagacgagc |
1135613 |
T |
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| Q |
106 |
acatgaattgaaaccaaattattgagaagattcatgatgtcaacctctcacacaccaagttggtttattcatatttttagtctacctaaaataattttgt |
205 |
Q |
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| T |
1135612 |
acatgaattgaaaccaaattattgagaagattcatgatgtcaacctctcacacaccaagttggtttattcatatttttagtctaccttaaataattttgc |
1135513 |
T |
|
| Q |
206 |
tcaaaaaatcaacctaaaatagtcaaatagtttgacttatatgagtgaggagtagtaattttctattttcaaggtcatagatgttttttgatatacagat |
305 |
Q |
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| T |
1135512 |
tcaaaaaatcaacctaaaatagtcaaatagtttgactaatatgagtgaggagtagtaattttctattttcaaggtcatagatgttttttgatatacagat |
1135413 |
T |
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| Q |
306 |
aaaatgtgattaaccaatcat--taaacacataaatacaaagtgaaaaattctaaattcaaatttaagacaccacaaaatatattcagtttaacaatctt |
403 |
Q |
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| T |
1135412 |
aaaatgtgattaaccaaccattataaacacataaatacaaagtgaaaaattctgaattcaaatctaagagaccacaaaatatattcagtctaacaatctt |
1135313 |
T |
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| Q |
404 |
gatacaatatgttgtgctaatctttatggattttcattttaacacccgtac |
454 |
Q |
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| T |
1135312 |
gatacaatatgttgtgctaatctttatggatttttattttaacacccgtac |
1135262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 652 - 895
Target Start/End: Complemental strand, 1135065 - 1134822
Alignment:
| Q |
652 |
aaaatggaaccaaaatggagcaccattctgccagcaacctccatattctccagcttcgatgacctcaaatggatcacagcagaatttgatcatgaacttt |
751 |
Q |
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| T |
1135065 |
aaaatggaaccaaaatggagcaccattctgccagcaacctccatattctccagcttcgatgacctcaaatggatcacagcagaatttgatcatgaacttt |
1134966 |
T |
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| Q |
752 |
tcaccaagcggcccgttaccgtcgaaacagcaatcgacgacaacgatgtaaaaccgtctaaggtggatccattcctcggtgtcggcgatgtttgctctgg |
851 |
Q |
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| T |
1134965 |
tcaccaagcggcccgttaccgtcgaaacagcaatcgacgacaacgatgtaaaaccgtctaaggtggatccattcctcggtgtcggcgatgtttgctctga |
1134866 |
T |
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| Q |
852 |
taacatcgccaatgccgccgattttcataatctggtctgtgctc |
895 |
Q |
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| T |
1134865 |
taacatcgccaatgccgccgattttcataatctggtcagtgctc |
1134822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 524 - 592
Target Start/End: Complemental strand, 1135192 - 1135124
Alignment:
| Q |
524 |
gaatcaaggtttcgtgttataccacgcatctaatgtttcaaattttgcctatttataggcacgaagcag |
592 |
Q |
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| T |
1135192 |
gaatcaaggtttcgtgttataccacgcatctaatgtttcaaattttgcctatttataggcacgaagcag |
1135124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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