View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5649-Insertion-3 (Length: 191)
Name: NF5649-Insertion-3
Description: NF5649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5649-Insertion-3 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 154; Significance: 6e-82; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 154; E-Value: 6e-82
Query Start/End: Original strand, 7 - 191
Target Start/End: Complemental strand, 5920911 - 5920726
Alignment:
| Q |
7 |
aaatggtgcattggatcatggtttggggggctctacaggttctggtacttgtttgtctccagagcaatatactcaacttgtttcc-ttgctacaacatgc |
105 |
Q |
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| T |
5920911 |
aaatggtgcattggatcatggtttggggggctctacaggttctggtacctgtttgtctccagagcaatatactcaacttgtttcctttgctacaacaggc |
5920812 |
T |
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| Q |
106 |
tagtttggtttcctcatcatctctcccttctacttcaaatgccaccaccaaccatgtccaagtcactccttttgtttctattagca |
191 |
Q |
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| T |
5920811 |
aagtttggtttcctcatcatctctcccttctacttcaaattccaccaccaaccatatccaagtcactccttttgtttctactagca |
5920726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 114
Target Start/End: Original strand, 26968721 - 26968778
Alignment:
| Q |
57 |
gtttgtctccagagcaatatactcaacttgtttccttgctacaacatgctagtttggt |
114 |
Q |
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| T |
26968721 |
gtttatctcaagagcaatatgctcaactagtttccttgctacaacaggctagtttggt |
26968778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 129; Significance: 5e-67; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 129; E-Value: 5e-67
Query Start/End: Original strand, 7 - 183
Target Start/End: Complemental strand, 20325219 - 20325043
Alignment:
| Q |
7 |
aaatggtgcattggatcatggtttggggggctctacaggttctggtacttgtttgtctccagagcaatatactcaacttgtttccttgctacaacatgct |
106 |
Q |
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| T |
20325219 |
aaatggtgcattggatcatggtttggggggctctacaggttctggtactagtttgtctccagagcaatatactcaacttgtttccttgctgcagcaggct |
20325120 |
T |
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| Q |
107 |
agtttggtttcctcatcatctctcccttctacttcaaatgccaccaccaaccatgtccaagtcactccttttgtttc |
183 |
Q |
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| T |
20325119 |
agtttgatttcctcatcatctcctcctcctacttcaaatgctaccaccaatcatgtccaaaccactccttttgtttc |
20325043 |
T |
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