View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5649_high_12 (Length: 268)
Name: NF5649_high_12
Description: NF5649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5649_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 44278403 - 44278141
Alignment:
| Q |
1 |
ctcattcctttgtgaaatcattgagaaaatgatatttgacatctatatgnnnnnnnatcttccacgcatcacaatattctttcgtagctttattgatgaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
44278403 |
ctcattcctttgtgaaatcattgagaaaatgatatttgacatctatatgtttttttatcttccatgcatcacaatattctttcgtagctttattgatgaa |
44278304 |
T |
|
| Q |
101 |
ctattatcacataatatatcacaatgcaccccttttgtgactctctaagttgatcaagaattcttctaaccatacaacacgacaaacacatgaagttgcc |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44278303 |
ctattatcacataatatatcacaatgcaccccttttgtgactctctaagttgatcaagaattcttctaaccatacaacacgacaaacacatgaagttgcc |
44278204 |
T |
|
| Q |
201 |
actgcaaactcaacatttgtggtagaaagagtgacaatatcttgtttcttagatgaccatgat |
263 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44278203 |
actgcaaactcaacatttgtggtagaaagagtgacaatatcttgtttcttagatgaccatgat |
44278141 |
T |
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