View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5649_high_16 (Length: 252)
Name: NF5649_high_16
Description: NF5649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5649_high_16 |
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Alignment Details
Target: chr6 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 5 - 239
Target Start/End: Original strand, 5698663 - 5698898
Alignment:
| Q |
5 |
caaacaaaaacttagaaataaaaagaattcaattgaagtattttaattgcttcaaattttaaggttttctagaattttcaattatctcattcaaactcac |
104 |
Q |
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| T |
5698663 |
caaaaaaaaaattagaaataaaaagaattcaattgaagtattttaattgcttcaaattttaaggttttctagaattttcaattatctcattcaaactcac |
5698762 |
T |
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| Q |
105 |
tctaagaatatccccattaaatgttgagcatatctataaaaatttctaaggattaaatatttttgatccatatagaattaagacacttcaagtctagccc |
204 |
Q |
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| T |
5698763 |
tctaagaatatccccattaaatgttgagcatatctataaaaatttctaaggattaaatatttttgatccatatagaattaagacacttcaagtctagccc |
5698862 |
T |
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| Q |
205 |
tcgatatattatattcaattttagt-cctgtttttc |
239 |
Q |
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| T |
5698863 |
tcgatatattatattcaattttagtccctgtttttc |
5698898 |
T |
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Back To:
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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 107
Target Start/End: Complemental strand, 179802 - 179725
Alignment:
| Q |
28 |
agaattcaattgaagtattttaattgcttcaaattttaaggttttctagaattttcaattatctcattcaaactcactct |
107 |
Q |
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| T |
179802 |
agaactcaattgaagtatttgaattgcta-aaattctaat-ttttcttaaattttcaattatctcatccaaactcactct |
179725 |
T |
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