View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5649_high_2 (Length: 448)
Name: NF5649_high_2
Description: NF5649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5649_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 388; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 19 - 438
Target Start/End: Original strand, 1135705 - 1136124
Alignment:
| Q |
19 |
ggacctgagtcatgattgaagccgttcatattcaaactaatccaaattaaaatcgcaaactaatccaaaataactcaagaccatgcaaggtccaacaaat |
118 |
Q |
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| T |
1135705 |
ggacctgagtcatgattgaagccgttcatattcaaactaatccaaattaaaatcgcaaactaatccaaaataactcaaaaccatgcaaagtctaacaaat |
1135804 |
T |
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| Q |
119 |
caaatttgtttggatgtcttttccaaaaattgctcagatttgattggggcgtctatccagtgtcaaagtttctaattacactgggttagcaaaaatatat |
218 |
Q |
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| T |
1135805 |
caaatttgtttggatgtcttttccaaaaattgctcagatttgattggggcgtctatccaatgtcaaagtttctaattacactaggttagcaaaaatatat |
1135904 |
T |
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| Q |
219 |
aactaaagattcatatttatgttggacatgtctcaaataggataacatttgatggagggaacctaggagaaccctaaataaataaaatttgaataagaag |
318 |
Q |
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| T |
1135905 |
aactaaagattcatatttatgttggacatgtctcaaataggataacattcgatggagggaacctatgagaaccctaaataaataaaatttgaataagaag |
1136004 |
T |
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| Q |
319 |
tttaggcgagctccgctccaagtgctcattagggttagtgcatatgtcaagctcaaagagtttttgcggggatcacccattaaaaatgtcctcacttcaa |
418 |
Q |
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| T |
1136005 |
tttaggcgagctccgctccaagtgctcattagggttagtgcatatgtcaagctcaaagagtttttacggggatcacccattaaaaatgtcctcacttcaa |
1136104 |
T |
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| Q |
419 |
caacgataatttaacctatg |
438 |
Q |
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| T |
1136105 |
caacgataatttaacctatg |
1136124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 44 - 88
Target Start/End: Original strand, 52921876 - 52921920
Alignment:
| Q |
44 |
tcatattcaaactaatccaaattaaaatcgcaaactaatccaaaa |
88 |
Q |
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| T |
52921876 |
tcatatccaaaccaatccaaattgaaaccgcaaactaatccaaaa |
52921920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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