View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5649_high_8 (Length: 311)
Name: NF5649_high_8
Description: NF5649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5649_high_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 19 - 301
Target Start/End: Complemental strand, 51153025 - 51152743
Alignment:
| Q |
19 |
atcaataaatgtgtcaacattattgcatggacctcaaatcccctgtaaaagctaattcaacttcatgcctacatgttacatgaaccaaatcaactatcta |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51153025 |
atcaataaatgtgtcaacattattgcatggacctcaaatcccctgcaaaagctaattcaacttcatgcctacatgttacatgaaccaaatcaactatcta |
51152926 |
T |
|
| Q |
119 |
caggtcttaagaagcccaacctaggaatattactaaatgcaaatgaatatttacagttactaagatgaaccaatgtcttggtaaatggtaataagtaatc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51152925 |
caggtcttaagaagcccaacctaggaatattactaaatgcaaatgaatatttacagttactaagatgaaccaatgtcttggtaaatggtaataagtaatc |
51152826 |
T |
|
| Q |
219 |
atcataccttggacatgttaaaagttgaaaagattttaatcaatcaattcaacacactcaactataattaggactcacctttg |
301 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51152825 |
atcataccttggacatgttaaaagttgaaaagattttaatcaatcaattcaacacactcaactataattaggactcacctttg |
51152743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University