View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5649_high_9 (Length: 292)
Name: NF5649_high_9
Description: NF5649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5649_high_9 |
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| [»] scaffold0929 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 18 - 267
Target Start/End: Original strand, 6362927 - 6363188
Alignment:
| Q |
18 |
agaacaatgtcaacatagtttgcttataggttaatgatttgcttataatgcaagtaactaaccatgtgagtttgttacatagtatttggcctattcacat |
117 |
Q |
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| T |
6362927 |
agaacaatgtcaacatagtttgcttataagttaatgatttgcttataatgcaagtaactaaccatgtgagtttgttacatagtatttggcctattcacat |
6363026 |
T |
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| Q |
118 |
atcatacataggcaacaattttctatatctacacttaatagaagaatcaatttgtttgacgttaatca------------attttacctattcacatatt |
205 |
Q |
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| T |
6363027 |
atcatacataggcaacaattttctatatctacacttaatagaagaatcaatttgtttgacgttaatcaaactcaacggctattttacctattcacatatt |
6363126 |
T |
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| Q |
206 |
ttaaagatacccaaccctataatttaagggagcgaattgagatctagtgctggtatgaatct |
267 |
Q |
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| T |
6363127 |
ttaaagatacccaaccctataattttagggagcgaattgagatctagtgctggtatgaatct |
6363188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0929 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0929
Description:
Target: scaffold0929; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 186 - 268
Target Start/End: Original strand, 1690 - 1772
Alignment:
| Q |
186 |
attttacctattcacatattttaaagatacccaaccctataatttaagggagcgaattgagatctagtgctggtatgaatctg |
268 |
Q |
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| T |
1690 |
attttacctattcacatactttaaagataccaaaccctattatttaagggagcgaattgagattaggtgctcgtatgaatctg |
1772 |
T |
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