View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5649_low_3 (Length: 434)
Name: NF5649_low_3
Description: NF5649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5649_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 13 - 416
Target Start/End: Original strand, 36415637 - 36416040
Alignment:
| Q |
13 |
tgagatgaacttaaacctgcattagannnnnnnngtgcagaaagaataaaatgttttgaagcagtattatggaatgaagcttgatccttcaagaaagctt |
112 |
Q |
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| T |
36415637 |
tgagatgaacttaaacctgcattagattttttttgtgcagaaagaataaaatgttttgaagcagtattatggaatgaagcttgatccttcaagaaagctt |
36415736 |
T |
|
| Q |
113 |
gtaatgtctccataagctcttcggaaactttttgcacacttggatactcataggaccttccaattccaatatttaaacaaaaagaataaaatgcagataa |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
36415737 |
gtaatgtctccataagctcttcggaaactttttgcacacttggatactcataggaccttccaattccaatatttaaacaaaatgaataaaatgcagataa |
36415836 |
T |
|
| Q |
213 |
ctcatcaaattgtttatatgatttaacacatgcattgaatgcagtaacacaagctgaaagtggtaaattgaagaaattatccaaaacaaccccaagccca |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36415837 |
ctcatcaaattgtttatatgatttaacacatgcattgaatgcagtaacacaagctgaaagtggtaaattgaagaaattatccaaaacaaccccaagccca |
36415936 |
T |
|
| Q |
313 |
tcagagatatctttgtaaagatcaaaactttcttgcacaacagcataaagagaaatctgaaccaaacgattattcttagccgctccagtcggtctcgtac |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36415937 |
tcagagatatctttgtaaagatcaaaactttcttgcacaacagcataaagagaaatctgaaccaaacgattattcttagccgctccagtcggtctcgtac |
36416036 |
T |
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| Q |
413 |
caat |
416 |
Q |
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|||| |
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| T |
36416037 |
caat |
36416040 |
T |
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