View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5649_low_4 (Length: 340)
Name: NF5649_low_4
Description: NF5649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5649_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 55 - 334
Target Start/End: Complemental strand, 50941909 - 50941629
Alignment:
| Q |
55 |
tgcgtcatggacaaaaaatatgttatcgtatccaagcgttgataaacgcatgactggagttttttattaataatagtataagttagcaaaggatagttta |
154 |
Q |
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| T |
50941909 |
tgcgtcatggacaaaaaatatgttatcatatccaagcgttgataaacgcatgactggagttttttattaataatagtataagttagcaaaggatagttta |
50941810 |
T |
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| Q |
155 |
atttcttctttgaaagaaagagtaatttacttttttattttcaactattatcagctttgcatcaataaaattgatttataaatttgattgttgtcatatt |
254 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50941809 |
atttcttctttgaaagaaagagtaatttact-ttttattttcaactattatcagctttgcatcaataaaattgatttataaatttgattgttgtcatatt |
50941711 |
T |
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| Q |
255 |
gtaaatatactccatagatgttggaaattctatttgaaatttacagttaggctataa--ctctgaaaatacatattattcga |
334 |
Q |
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| T |
50941710 |
gtaaatatactccatagatgttggaaattctatttgaaatttacagttaggctataactctctgaaaatacatattactcga |
50941629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 286 - 336
Target Start/End: Original strand, 22208435 - 22208485
Alignment:
| Q |
286 |
atttgaaatttacagttaggctataactctgaaaatacatattattcgaca |
336 |
Q |
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| T |
22208435 |
atttgaattttacaattaggctaaatctctgaaaatatatattattcgaca |
22208485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 146; Significance: 7e-77; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 55 - 241
Target Start/End: Original strand, 46537054 - 46537241
Alignment:
| Q |
55 |
tgcgtcatggacaaaaaatatgttatcgtatccaagcgttgataaacgcatgactggag--ttttttattaataatagtataagttagcaaaggatagtt |
152 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||| |
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| T |
46537054 |
tgcgtcatggacaaaaaatatgttatcgtatccaagcgttgataaacgcatgactggagttttttttattaataatagtttaagttagcaaagaatagtt |
46537153 |
T |
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| Q |
153 |
taatttcttctttgaaagaaagagtaatttacttttttattttcaactattatcagctttgcatcaataaaattgatttataaatttga |
241 |
Q |
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| | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
46537154 |
tgagttcttctttgaaagaaagagtaattta-gtttttattttcaactattatcagctttgcatcaataaaattgatttagaaatttga |
46537241 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 128; Significance: 4e-66; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 55 - 241
Target Start/End: Complemental strand, 18438368 - 18438178
Alignment:
| Q |
55 |
tgcgtcatggacaaaaaatatgttatcgtatccaagcgttgataaacgcatgactggag-----ttttttattaataatagtataagttagcaaaggata |
149 |
Q |
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|||||||||| |||||||||||||||| ||||||||| ||||||||||| |||||| || |||||||||||||||||| ||||||||||||||||| |
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| T |
18438368 |
tgcgtcatgggcaaaaaatatgttatcttatccaagcattgataaacgcttgactgaagtttttttttttattaataatagtttaagttagcaaaggata |
18438269 |
T |
|
| Q |
150 |
gtttaatttcttctttgaaagaaagagtaatttacttttttattttcaactattatcagctttgcatcaataaaattgatttataaatttga |
241 |
Q |
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|||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
18438268 |
gtttaagttcttctttgaaagaaagagtaattta-gtttttattttcaactattatcagctttgcatcaataaaattgatttagaaatttga |
18438178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 334
Target Start/End: Complemental strand, 44072313 - 44072265
Alignment:
| Q |
286 |
atttgaaatttacagttaggctataactctgaaaatacatattattcga |
334 |
Q |
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||||||| |||||| |||||||| |||||||| |||| ||||||||||| |
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| T |
44072313 |
atttgaattttacaattaggctaaaactctgataatatatattattcga |
44072265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 334
Target Start/End: Original strand, 385644 - 385684
Alignment:
| Q |
294 |
tttacagttaggctataactctgaaaatacatattattcga |
334 |
Q |
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|||||| |||||||| ||||||||||||| ||||||||||| |
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| T |
385644 |
tttacaattaggctaaaactctgaaaatatatattattcga |
385684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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