View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5649_low_7 (Length: 335)
Name: NF5649_low_7
Description: NF5649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5649_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 18 - 320
Target Start/End: Complemental strand, 30184940 - 30184638
Alignment:
| Q |
18 |
tatcaagtatcgtatctgagcattgtcattggcaaaatcagcccaacaaccaaacagaaccagagccagagccttagactctgaatctccactgttgaaa |
117 |
Q |
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| T |
30184940 |
tatcaagtatcgtatctgagcattgtcattggcaaaatcagcccaacaaccaaacagaaccagagccagagccttagactctgaatctccactgttgaaa |
30184841 |
T |
|
| Q |
118 |
acagatttcacccgcttcaacaactccagatggttagctactctggccactgacagcaaccctttacactgcttgtgcttcctgttatcatggtgctttc |
217 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30184840 |
acagatttcacctgcttcaacaactccagatggttagctactctggccactgacagcaaccctttacactgcttgtgcttcctgttatcatggtgctttc |
30184741 |
T |
|
| Q |
218 |
tctcgatcaagaaaactctgacaacagaaagcctgatttctgtgttgcctcctctaaatgcatcagcaaggcgtaagaggattgtattagcaaatagttc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30184740 |
tctcgatcaagaaaactctgacaacagaaagcctgatttctgtgttgcctcccctaaatgcatcagcaaggcgtaagaggattgtattagcaaatagttc |
30184641 |
T |
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| Q |
318 |
atc |
320 |
Q |
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||| |
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| T |
30184640 |
atc |
30184638 |
T |
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