View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5650-Insertion-3 (Length: 1045)

Name: NF5650-Insertion-3
Description: NF5650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5650-Insertion-3
NF5650-Insertion-3
[»] chr7 (8 HSPs)
chr7 (606-998)||(21469335-21469730)
chr7 (8-267)||(21471134-21471393)
chr7 (382-519)||(21470882-21471019)
chr7 (391-467)||(39269520-39269596)
chr7 (384-463)||(6383125-6383204)
chr7 (450-499)||(7955460-7955509)
chr7 (450-500)||(1072692-1072742)
chr7 (390-443)||(6038571-6038624)
[»] chr3 (7 HSPs)
chr3 (32-264)||(11520480-11520712)
chr3 (382-500)||(5633369-5633484)
chr3 (450-518)||(11520261-11520329)
chr3 (424-520)||(8403006-8403100)
chr3 (407-505)||(14426768-14426867)
chr3 (391-466)||(16226058-16226133)
chr3 (404-462)||(13586336-13586394)
[»] chr6 (10 HSPs)
chr6 (16-256)||(15574287-15574531)
chr6 (33-256)||(17860888-17861112)
chr6 (385-494)||(15574059-15574168)
chr6 (388-500)||(19742334-19742446)
chr6 (393-500)||(18388771-18388878)
chr6 (33-193)||(15576632-15576792)
chr6 (147-264)||(18389003-18389118)
chr6 (389-473)||(28588386-28588470)
chr6 (389-439)||(22525972-22526022)
chr6 (389-454)||(22570610-22570675)
[»] chr8 (10 HSPs)
chr8 (8-256)||(22895051-22895298)
chr8 (382-515)||(13082339-13082472)
chr8 (8-256)||(16052796-16053044)
chr8 (382-505)||(22895426-22895549)
chr8 (391-462)||(17099468-17099539)
chr8 (392-467)||(17511660-17511735)
chr8 (382-505)||(16053155-16053278)
chr8 (391-467)||(24721601-24721677)
chr8 (36-87)||(20988999-20989050)
chr8 (389-440)||(28857352-28857403)
[»] chr5 (13 HSPs)
chr5 (15-264)||(24841112-24841351)
chr5 (15-134)||(22754426-22754545)
chr5 (454-518)||(17026750-17026813)
chr5 (423-516)||(16603910-16604001)
chr5 (383-500)||(19330770-19330887)
chr5 (8-111)||(17027029-17027132)
chr5 (391-467)||(24319833-24319909)
chr5 (450-516)||(24840902-24840968)
chr5 (389-443)||(26118082-26118136)
chr5 (389-466)||(24262826-24262903)
chr5 (391-443)||(31599372-31599424)
chr5 (406-467)||(9834246-9834307)
chr5 (183-256)||(17026945-17027018)
[»] chr2 (12 HSPs)
chr2 (78-266)||(9504031-9504209)
chr2 (78-266)||(9515397-9515575)
chr2 (99-264)||(28278847-28279012)
chr2 (383-518)||(9503782-9503917)
chr2 (383-518)||(9515148-9515283)
chr2 (383-518)||(28279133-28279269)
chr2 (383-499)||(27867211-27867327)
chr2 (386-482)||(32292545-32292641)
chr2 (386-499)||(24434677-24434790)
chr2 (382-500)||(22389546-22389664)
chr2 (391-440)||(25923374-25923423)
chr2 (386-499)||(32242997-32243110)
[»] chr1 (4 HSPs)
chr1 (382-518)||(23222642-23222778)
chr1 (389-454)||(16115551-16115616)
chr1 (423-518)||(14396862-14396955)
chr1 (383-443)||(16259532-16259592)
[»] scaffold0990 (2 HSPs)
scaffold0990 (147-264)||(2833-2950)
scaffold0990 (382-489)||(2615-2721)
[»] scaffold0049 (1 HSPs)
scaffold0049 (391-436)||(40276-40321)


Alignment Details
Target: chr7 (Bit Score: 361; Significance: 0; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 606 - 998
Target Start/End: Complemental strand, 21469730 - 21469335
Alignment:
Q  606 gatttaaatagtatatggatcaaaccccttaggaagttaagatatatcttggcacttgagctaactgcactcttacatatata--atgagatcataaagg 703  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  21469730 gatttaaatagtatatggatcaaaccccttatgaagttaagatatatcttggcacttgagctaactgcactcttacatatatataatgagatcataaagg 21469631  T
Q  704 tttaaatatcctccttgatatagtttgcaagaaaagaaaaagtaatgaagaaagattacttcaaatctcacaattattaaaactaaaatatccttataca 803  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21469630 tttatatatcctccttgatatagtttgcaagaaaagaaaaagtaatgaagaaagattacttcaaatctcacaattattaaaactaaaatatccttataca 21469531  T
Q  804 caatcaaacaataataatgaagctgaagcacttaaaatcaaatagaaaccaaatcactcatgctaagaaattctagttccctagtcacattgctgttatt 903  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21469530 caatcaaaccataattatgaagctgaagcacttaaaatcaaatagaaaccaaatcactcatgctaagaaattctagttccctagtcacattgctgttatt 21469431  T
Q  904 aactatttcaaagttactttagtgttgtagaactattagaagagtaatgcaatttcatatttgtgttgctgctgcttgatg-tggacatgaatgtt 998  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  21469430 aactatttcaaagttactttagtgttgtagaactattagaagagtaatgcaatttcatatttgtgttgctgctgcttgatgttggacatgaatgtt 21469335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 232; E-Value: 1e-127
Query Start/End: Original strand, 8 - 267
Target Start/End: Complemental strand, 21471393 - 21471134
Alignment:
Q  8 atcatcacacacacatacaaagggcttttcaaggttataacgtgactgaggttaagttaggatatattttggaaagtaggctagcaagcacttggagtta 107  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  21471393 atcatcacacacacatacaaaggacttttcaaggttataacgtgactaaggttaagttaggatatattttggaaagtaggctaacaagcacttggagtta 21471294  T
Q  108 gttcttaaggattctctatttgaaatattttgcagatattttgtcatccaaacctgtaacttcattcacaaactgtgtcacaaccattattatgaggcac 207  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||    
T  21471293 gttcttaaggattccctatttgaaatattttgcagatattttgtcatccaaacttgtaacttcattcacaaactgtgtcacaaccattattatgaggtac 21471194  T
Q  208 tagctttcatttatgtagacaattcaaagaatttgggcactagtagaacaacttattatc 267  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21471193 tggctttcatttatgtagacaattcaaagaatttgggcactagtagaacaacttattatc 21471134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 130; E-Value: 8e-67
Query Start/End: Original strand, 382 - 519
Target Start/End: Complemental strand, 21471019 - 21470882
Alignment:
Q  382 gataaccaagttctactagtatcccaccccaaacttagaacgttgctaattccaaagagcaatcgcagacttaatttcaaaccatgacaagtatttcact 481  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  21471019 gataaccaagttctactagtatcccatcccaaacttagaacgttgctaattccaaagagcaatcccagacttaatttcaaaccatgacaagtatttcact 21470920  T
Q  482 aacttatctaactccaaaatgaaaatcaaacagatatg 519  Q
    ||||||||||||||||||||||||||||||||||||||    
T  21470919 aacttatctaactccaaaatgaaaatcaaacagatatg 21470882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 391 - 467
Target Start/End: Complemental strand, 39269596 - 39269520
Alignment:
Q  391 gttctactagtatcccaccccaaacttagaacgttgctaattccaaagagcaatcgcagacttaatttcaaaccatg 467  Q
    ||||||||| || ||||||||||||||| || ||| ||||||||||||||||| | || ||||| ||||||| ||||    
T  39269596 gttctactattaccccaccccaaacttaaaatgtttctaattccaaagagcaaccccaaacttagtttcaaaacatg 39269520  T

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Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 384 - 463
Target Start/End: Complemental strand, 6383204 - 6383125
Alignment:
Q  384 taaccaagttctactagtatcccaccccaaacttagaacgttgctaattccaaagagcaatcgcagacttaatttcaaac 463  Q
    ||||||||||||||||||| |||||| |||||| |  | ||||||||||| |||||||||||  | ||||| ||||||||    
T  6383204 taaccaagttctactagtaccccacctcaaactaaagatgttgctaattcaaaagagcaatccaacacttagtttcaaac 6383125  T

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Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 450 - 499
Target Start/End: Complemental strand, 7955509 - 7955460
Alignment:
Q  450 acttaatttcaaaccatgacaagtatttcactaacttatctaactccaaa 499  Q
    ||||||||| ||| ||||||||||||||||||||  ||||||||||||||    
T  7955509 acttaattttaaatcatgacaagtatttcactaatctatctaactccaaa 7955460  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 450 - 500
Target Start/End: Complemental strand, 1072742 - 1072692
Alignment:
Q  450 acttaatttcaaaccatgacaagtatttcactaacttatctaactccaaaa 500  Q
    ||||||||||||| |||||||| ||||||| |||  |||||||||||||||    
T  1072742 acttaatttcaaatcatgacaaatatttcattaatatatctaactccaaaa 1072692  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 390 - 443
Target Start/End: Complemental strand, 6038624 - 6038571
Alignment:
Q  390 agttctactagtatcccaccccaaacttagaacgttgctaattccaaagagcaa 443  Q
    ||||||||| ||| |||||||||||||||  | ||||||||||||||| |||||    
T  6038624 agttctactggtaccccaccccaaacttaagatgttgctaattccaaatagcaa 6038571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 126; Significance: 2e-64; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 32 - 264
Target Start/End: Complemental strand, 11520712 - 11520480
Alignment:
Q  32 cttttcaaggttataacgtgactgaggttaagttaggatatattttggaaagtaggctagcaagcactt-ggagttagttcttaaggattctctatttga 130  Q
    ||||||||||||||||||||  |||||| ||| | |||||||||| ||||||||||||| ||||||||| ||||||||||| ||||||||| ||||||||    
T  11520712 cttttcaaggttataacgtggatgaggtaaaggtgggatatatttaggaaagtaggctaacaagcactttggagttagttcctaaggattccctatttga 11520613  T
Q  131 aatattttgcagatattttgtcatccaaacctgtaacttcattcacaaactgtgtcacaaccattattatgaggcactagctttcatttatgtagacaat 230  Q
    |||| ||||  ||| | | |||||||||||||||||||||||||| ||||||||||||||||| | |||||||| | |||||||||||||||||| || |    
T  11520612 aatactttgacgatctct-gtcatccaaacctgtaacttcattcataaactgtgtcacaaccaatgttatgaggtaatagctttcatttatgtagccagt 11520514  T
Q  231 tcaaagaatttgggcactagtagaacaacttatt 264  Q
    ||||||||||||||||||||| |||| |||||||    
T  11520513 tcaaagaatttgggcactagtcgaaccacttatt 11520480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 382 - 500
Target Start/End: Original strand, 5633369 - 5633484
Alignment:
Q  382 gataaccaagttctactagtatcccaccccaaacttagaacgttgctaattccaaagagcaatcgcagacttaatttcaaaccatgacaagtatttcact 481  Q
    ||||||||||||||||||||| | ||| |||||||||  |  |||||||||  ||||||||| | || ||||||||||||||||||||||||||||   |    
T  5633369 gataaccaagttctactagtacctcactccaaacttaagattttgctaattttaaagagcaaccccaaacttaatttcaaaccatgacaagtattt---t 5633465  T
Q  482 aacttatctaactccaaaa 500  Q
    ||  |||||||||||||||    
T  5633466 aatctatctaactccaaaa 5633484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 450 - 518
Target Start/End: Complemental strand, 11520329 - 11520261
Alignment:
Q  450 acttaatttcaaaccatgacaagtatttcactaacttatctaactccaaaatgaaaatcaaacagatat 518  Q
    |||||||||| || ||||||||||||||||||||| ||||||||||||||| | |||||||||||||||    
T  11520329 acttaatttctaatcatgacaagtatttcactaacctatctaactccaaaagggaaatcaaacagatat 11520261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 424 - 520
Target Start/End: Original strand, 8403006 - 8403100
Alignment:
Q  424 ttgctaattccaaagagcaatcgcagacttaatttcaaaccatgacaagtatttcactaacttatctaactccaaaatgaaaatcaaacagatatga 520  Q
    |||||||||| ||||||||| | || ||||||||||||||||||||| ||||||||||||  |||| ||||||||||   |||||||| ||||||||    
T  8403006 ttgctaattctaaagagcaacctcaaacttaatttcaaaccatgacacgtatttcactaatctatcaaactccaaaa--gaaatcaaatagatatga 8403100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 407 - 505
Target Start/End: Complemental strand, 14426867 - 14426768
Alignment:
Q  407 accccaaacttagaacgttgctaattccaaagagcaatcgcagacttaatttcaaaccatgac-aagtatttcactaacttatctaactccaaaatgaaa 505  Q
    |||||||||||| |  ||| |||||||||||||||||   || ||||||||| |||||||||| ||||||||||||||  ||||||||||||||| ||||    
T  14426867 accccaaacttaaattgttcctaattccaaagagcaactccaaacttaattttaaaccatgacaaagtatttcactaatctatctaactccaaaaagaaa 14426768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 391 - 466
Target Start/End: Original strand, 16226058 - 16226133
Alignment:
Q  391 gttctactagtatcccaccccaaacttagaacgttgctaattccaaagagcaatcgcagacttaatttcaaaccat 466  Q
    ||||||||  || ||||||||||||||| || |||| |||||||||||||||| | || ||||| ||| |||||||    
T  16226058 gttctactgttaccccaccccaaacttaaaatgttgttaattccaaagagcaaccacaaacttatttttaaaccat 16226133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 404 - 462
Target Start/End: Original strand, 13586336 - 13586394
Alignment:
Q  404 cccaccccaaacttagaacgttgctaattccaaagagcaatcgcagacttaatttcaaa 462  Q
    ||||||||||||||| || ||| ||||||||||||||||| | || ||||| |||||||    
T  13586336 cccaccccaaacttataatgtttctaattccaaagagcaaccccaaacttagtttcaaa 13586394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 101; Significance: 2e-49; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 101; E-Value: 2e-49
Query Start/End: Original strand, 16 - 256
Target Start/End: Complemental strand, 15574531 - 15574287
Alignment:
Q  16 acacacatacaaagggcttttcaaggttataacgtgactgaggttaagttaggatatattttggaaagtaggctagcaagcac-ttggag----ttagtt 110  Q
    ||||||||| | ||| |||||||||||||||||||| ||||||||||| | |||||||||| ||||||||||| |  |||||| ||||||    ||||||    
T  15574531 acacacatatagaggacttttcaaggttataacgtggctgaggttaaggtgggatatatttgggaaagtaggcaaagaagcactttggagttaattagtt 15574432  T
Q  111 cttaaggattctctatttgaaatattttgcagatattttgtcatccaaacctgtaacttcattcacaaactgtgtcacaaccattattatgaggcactag 210  Q
    | ||||||||| |||||||||||| ||||  |||  ||||||||| |||||| ||||||  ||| |||||||||||||||||||| |||||||| |||||    
T  15574431 cctaaggattccctatttgaaatactttgacgat-ctttgtcatctaaacctttaacttatttctcaaactgtgtcacaaccattgttatgaggtactag 15574333  T
Q  211 ctttcatttatgtagacaattcaaagaatttgggcactagtagaac 256  Q
    ||||||||||| ||| || |||||| ||||| ||||||||||||||    
T  15574332 ctttcatttatttagccagttcaaacaatttaggcactagtagaac 15574287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 33 - 256
Target Start/End: Original strand, 17860888 - 17861112
Alignment:
Q  33 ttttcaaggttataacgtgactgaggttaagttaggatatattttggaaagtaggctagcaagcac-ttggagttagttcttaaggattctctatttgaa 131  Q
    ||||||||||||||||||||||||||||||| | ||||||||||   ||||||||||| ||| ||| ||||||||||||| |||| |||| |||||| ||    
T  17860888 ttttcaaggttataacgtgactgaggttaaggtgggatatatttgaaaaagtaggctaacaaacactttggagttagttcctaagaattccctatttaaa 17860987  T
Q  132 atattttgcagatattttgtcatccaaacctgtaacttcattcacaaactgtgtcacaaccattattatgaggcactagctttcatttatgtagacaatt 231  Q
    ||| |||| | | | ||  |||| |||||| ||||||||||||||||||| |||||||| ||||  ||||||| ||||| |||||||| || | | | ||    
T  17860988 atactttg-acacacttaatcattcaaaccggtaacttcattcacaaactttgtcacaatcattgctatgagggactagttttcatttgtgaaca-agtt 17861085  T
Q  232 caaaga--atttgggcactagtagaac 256  Q
    ||||||  |||||||||||||||||||    
T  17861086 caaagaacatttgggcactagtagaac 17861112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 385 - 494
Target Start/End: Complemental strand, 15574168 - 15574059
Alignment:
Q  385 aaccaagttctactagtatcccaccccaaacttagaacgttgctaattccaaagagcaatcgcagacttaatttcaaaccatgacaagtatttcactaac 484  Q
    ||||||||| |||||||| ||||||| |||||||||| |||| ||| |||||| ||||||| || |||||| ||||||||||||||||||||| ||||||    
T  15574168 aaccaagttttactagtaccccaccctaaacttagaatgttgttaactccaaacagcaatcccaaacttaacttcaaaccatgacaagtattttactaac 15574069  T
Q  485 ttatctaact 494  Q
     |||||||||    
T  15574068 ctatctaact 15574059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 388 - 500
Target Start/End: Complemental strand, 19742446 - 19742334
Alignment:
Q  388 caagttctactagtatcccaccccaaacttagaacgttgctaattccaaagagcaatcgcagacttaatttcaaaccatgacaagtatttcactaactta 487  Q
    ||||||||||| |||  ||||||||||||||  | || | |||||||||||||||||| || ||||||||||||||||| |||||||||||||| || ||    
T  19742446 caagttctactggtacgccaccccaaacttaagatgtaggtaattccaaagagcaatctcaaacttaatttcaaaccataacaagtatttcactgacgta 19742347  T
Q  488 tctaactccaaaa 500  Q
    ||||| |||||||    
T  19742346 tctaattccaaaa 19742334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 393 - 500
Target Start/End: Complemental strand, 18388878 - 18388771
Alignment:
Q  393 tctactagtatcccaccccaaacttagaacgttgctaattccaaagagcaatcgcagacttaatttcaaaccatgacaagtatttcactaacttatctaa 492  Q
    |||||||||| |||| || ||||||||||   |||||||| |||||||||| | || ||| |||||||||||||||||||||| |||||||| |||||||    
T  18388878 tctactagtaccccatccaaaacttagaaaactgctaatttcaaagagcaaccacaaactcaatttcaaaccatgacaagtatatcactaacctatctaa 18388779  T
Q  493 ctccaaaa 500  Q
    ||||||||    
T  18388778 ctccaaaa 18388771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 33 - 193
Target Start/End: Original strand, 15576632 - 15576792
Alignment:
Q  33 ttttcaaggttataacgtgactgaggttaagttaggatatattttggaaagtaggctagcaagcac-ttggagttagttcttaaggattctctatttgaa 131  Q
    ||||||||||||| |||||  |||||||||| | || |||||||  ||||||| ||||  || ||| ||||||||||||| ||| ||||| |||||||||    
T  15576632 ttttcaaggttatcacgtggttgaggttaaggtggggtatatttgagaaagtatgctatgaaacacgttggagttagttcctaacgattccctatttgaa 15576731  T
Q  132 atattttgcagatattttgtcatccaaacctgtaacttcattcacaaactgtgtcacaacca 193  Q
    | | ||   | | | || ||||||||||| ||||||||||||||||| ||||||||||||||    
T  15576732 aaacttaaaaaaaaatt-gtcatccaaacttgtaacttcattcacaagctgtgtcacaacca 15576792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 147 - 264
Target Start/End: Complemental strand, 18389118 - 18389003
Alignment:
Q  147 tttgtcatccaaacctgtaacttcattcacaaactgtgtcacaaccattattatgaggcactagctttcatttatgtagacaattcaaagaatttgggca 246  Q
    |||||||| ||||| |||||||||||||| |||  |||| ||||||||  |||||||| ||||| ||||||| || ||| |  |||||||||||| ||||    
T  18389118 tttgtcattcaaacatgtaacttcattcataaa--gtgttacaaccatagttatgaggtactagttttcattgatatagtcggttcaaagaattttggca 18389021  T
Q  247 ctagtagaacaacttatt 264  Q
    ||||||| || |||||||    
T  18389020 ctagtaggactacttatt 18389003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 389 - 473
Target Start/End: Complemental strand, 28588470 - 28588386
Alignment:
Q  389 aagttctactagtatcccaccccaaacttagaacgttgctaattccaaagagcaatcgcagacttaatttcaaaccatgacaagt 473  Q
    |||||||||| |||||||||||||||||||  | |||  |||||||||||||||||| || |||||  || |||||||| |||||    
T  28588470 aagttctactggtatcccaccccaaacttaagatgttcataattccaaagagcaatctcaaacttagctttaaaccatgccaagt 28588386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 389 - 439
Target Start/End: Complemental strand, 22526022 - 22525972
Alignment:
Q  389 aagttctactagtatcccaccccaaacttagaacgttgctaattccaaaga 439  Q
    |||||||||| |||||||| |||||||||| || |||||||||||||||||    
T  22526022 aagttctactggtatcccatcccaaacttaaaatgttgctaattccaaaga 22525972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 389 - 454
Target Start/End: Original strand, 22570610 - 22570675
Alignment:
Q  389 aagttctactagtatcccaccccaaacttagaacgttgctaattccaaagagcaatcgcagactta 454  Q
    ||||||||||  || ||||||||||||||| |  ||||||||||||||||||||| |||| |||||    
T  22570610 aagttctactgttaccccaccccaaacttaaattgttgctaattccaaagagcaaccgcaaactta 22570675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 94; Significance: 2e-45; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 8 - 256
Target Start/End: Original strand, 22895051 - 22895298
Alignment:
Q  8 atcatcacacacacatacaaagggcttttcaaggttataacgtgactgaggttaagttaggatatattttggaaagtaggctagcaagcactt-ggagtt 106  Q
    ||||| ||||||||||| ||||| |||||||  |||||||| ||  |||||||||| | | |||||||| ||||||||||||| ||  ||||| ||||||    
T  22895051 atcatgacacacacatataaaggtcttttcagagttataacctggttgaggttaaggttgaatatatttgggaaagtaggctaacagacactttggagtt 22895150  T
Q  107 agttcttaaggattctctatttgaaatattttgcagatattttgtcatccaaacctgtaacttcattcacaaactgtgtcacaaccattattatgaggca 206  Q
    ||||| |||||||||  |||||||||||||||| | | | ||| |||||||||||| |||  ||||||||||||||||||| ||||||| |||||||| |    
T  22895151 agttcataaggattccatatttgaaatattttg-acaaactttatcatccaaacctctaatctcattcacaaactgtgtcataaccattgttatgaggta 22895249  T
Q  207 ctagctttcatttatgtagacaattcaaagaatttgggcactagtagaac 256  Q
    ||||||| ||||| || || || |||||||||||||||||||||| ||||    
T  22895250 ctagcttccattt-tgaagtcagttcaaagaatttgggcactagttgaac 22895298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 382 - 515
Target Start/End: Original strand, 13082339 - 13082472
Alignment:
Q  382 gataaccaagttctactagtatcccaccccaaacttagaacgttgctaattccaaagagcaatcgcagacttaatttcaaaccatgacaagtatttcact 481  Q
    ||||||||||||| ||||||| |||||| ||||||||||| |||||||||||||| |||||||| || ||||||||||||||||||| || |||||||||    
T  13082339 gataaccaagttcaactagtaccccacctcaaacttagaaagttgctaattccaatgagcaatcccaaacttaatttcaaaccatgataaatatttcact 13082438  T
Q  482 aacttatctaactccaaaatgaaaatcaaacaga 515  Q
    ||| ||||||||||||||| | ||||||||||||    
T  13082439 aacctatctaactccaaaagggaaatcaaacaga 13082472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 8e-27
Query Start/End: Original strand, 8 - 256
Target Start/End: Original strand, 16052796 - 16053044
Alignment:
Q  8 atcatcacacacacatacaaagggcttttcaaggttataacgtgactgaggttaagttaggatatattttggaaagtaggctagcaagcacttgg-agtt 106  Q
    ||||||||||||| | | | ||| ||||||||||||||||||||||||||| |||| |  |||||| ||| ||||||||| ||  ||  ||||   ||||    
T  16052796 atcatcacacacataaatagaggccttttcaaggttataacgtgactgaggataaggtgagatatagtttagaaagtaggttaaaaaatactttctagtt 16052895  T
Q  107 agttcttaaggattctctatttgaaatattttgcagatattttgtcatccaaacctgtaacttcattcacaaactgtgtcacaaccattattatgaggca 206  Q
    ||||| ||||||||| |||||||||||| |||| | |  |||| ||| |||||||| |||||||||||| ||  ||||| ||||||| | |||||||| |    
T  16052896 agttcgtaaggattccctatttgaaatactttg-acaacttttatcaaccaaacctttaacttcattcataatttgtgttacaaccaatgttatgaggta 16052994  T
Q  207 ctagctttcatttatgtagacaattcaaagaat-ttgggcactagtagaac 256  Q
    |  |||||||||| || ||  |||||||||||| |||||||||||||||||    
T  16052995 catgctttcatttgtg-agctaattcaaagaatattgggcactagtagaac 16053044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 382 - 505
Target Start/End: Original strand, 22895426 - 22895549
Alignment:
Q  382 gataaccaagttctactagtatcccaccccaaacttagaacgttgctaattccaaagagcaatcgcagacttaatttcaaaccatgacaagtatttcact 481  Q
    ||||| |||||||||| |||| || |||| ||| |||  | |||| |||||||||||||||| |  | ||||||||||||||||||||||||||||||||    
T  22895426 gataatcaagttctaccagtaccctaccctaaatttaagatgttggtaattccaaagagcaaccataaacttaatttcaaaccatgacaagtatttcact 22895525  T
Q  482 aacttatctaactccaaaatgaaa 505  Q
    || |||||||||||||||| ||||    
T  22895526 aagttatctaactccaaaaggaaa 22895549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 391 - 462
Target Start/End: Complemental strand, 17099539 - 17099468
Alignment:
Q  391 gttctactagtatcccaccccaaacttagaacgttgctaattccaaagagcaatcgcagacttaatttcaaa 462  Q
    ||||||||| || ||||||||||||||| || ||||||||||||||||||||| | |||||||| |||||||    
T  17099539 gttctactattaccccaccccaaacttaaaatgttgctaattccaaagagcaaccccagacttagtttcaaa 17099468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 392 - 467
Target Start/End: Original strand, 17511660 - 17511735
Alignment:
Q  392 ttctactagtatcccaccccaaacttagaacgttgctaattccaaagagcaatcgcagacttaatttcaaaccatg 467  Q
    |||||||| || ||||||||||||||| || ||||||||||||||||||||| | || |||||||| |||| ||||    
T  17511660 ttctactattaccccaccccaaacttaaaatgttgctaattccaaagagcaacctcaaacttaattccaaaacatg 17511735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 382 - 505
Target Start/End: Original strand, 16053155 - 16053278
Alignment:
Q  382 gataaccaagttctactagtatcccaccccaaacttagaacgttgctaattccaaagagcaatcgcagacttaatttcaaaccatgacaagtatttcact 481  Q
    |||||||||  |||||||||| | |||||||||| || || |||| |||||  ||| | ||| | || ||||| ||||||||| ||| ||||||||||||    
T  16053155 gataaccaaaatctactagtaccacaccccaaacataaaatgttgataatttgaaaaaacaacctcaaacttagtttcaaaccctgagaagtatttcact 16053254  T
Q  482 aacttatctaactccaaaatgaaa 505  Q
    ||| ||||||  ||||||| ||||    
T  16053255 aacctatctatttccaaaaagaaa 16053278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 391 - 467
Target Start/End: Complemental strand, 24721677 - 24721601
Alignment:
Q  391 gttctactagtatcccaccccaaacttagaacgttgctaattccaaagagcaatcgcagacttaatttcaaaccatg 467  Q
    ||||||||  || ||||||||||||||| |  ||||||||||||||||||||| | || ||||| ||||||| ||||    
T  24721677 gttctactgttaccccaccccaaacttaaagtgttgctaattccaaagagcaaccccaaacttagtttcaaaacatg 24721601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 20989050 - 20988999
Alignment:
Q  36 tcaaggttataacgtgactgaggttaagttaggatatattttggaaagtagg 87  Q
    ||||||||||||||||||| | |||||| | |||||||||| ||||||||||    
T  20989050 tcaaggttataacgtgacttatgttaaggtgggatatatttgggaaagtagg 20988999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 389 - 440
Target Start/End: Original strand, 28857352 - 28857403
Alignment:
Q  389 aagttctactagtatcccaccccaaacttagaacgttgctaattccaaagag 440  Q
    |||||||||||||| ||||||||||||||| ||  |||||||||| ||||||    
T  28857352 aagttctactagtaccccaccccaaacttaaaatattgctaattctaaagag 28857403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 89; Significance: 2e-42; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 15 - 264
Target Start/End: Complemental strand, 24841351 - 24841112
Alignment:
Q  15 cacacacatacaaagggcttttcaaggttataacgtgactgaggttaagttaggatatattttggaaagtaggctagcaagcactt-ggagttagttctt 113  Q
    |||||||||| ||||| ||||||  |||||||| ||| ||||||||||| | ||||  |||| |||||||||| || ||||  ||| ||||||||||| |    
T  24841351 cacacacatataaaggtcttttcttggttataatgtggctgaggttaaggttggattgatttgggaaagtaggataacaagtgctttggagttagttcct 24841252  T
Q  114 aaggattctctatttgaaatattttgcagatattttgtcatccaaacctgtaacttcattcacaaactgtgtcacaaccattattatgaggcactagctt 213  Q
    |||||||| |||||||||||| |||            |||||||||||| ||||||||||||||||| |||||||||||||| |||||||| ||||||||    
T  24841251 aaggattcgctatttgaaatacttta-----------tcatccaaacctataacttcattcacaaaccgtgtcacaaccattgttatgaggtactagctt 24841163  T
Q  214 tcatttatgtagacaattcaaagaatttgggcactagtagaacaacttatt 264  Q
    |||||| || || ||  |||||||||||||||||||||||||| |||||||    
T  24841162 tcatttttggagtcagatcaaagaatttgggcactagtagaaccacttatt 24841112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 15 - 134
Target Start/End: Complemental strand, 22754545 - 22754426
Alignment:
Q  15 cacacacatacaaagggcttttcaaggttataacgtgactgaggttaagttaggatatattttggaaagtaggctagcaagca-cttggagttagttctt 113  Q
    |||||||||||| ||| | |||||||||||||||||| ||||||||||| | ||||| | |||||||||||||||| ||||||  ||| ||||||||  |    
T  22754545 cacacacatacagaggacatttcaaggttataacgtggctgaggttaaggtgggata-aatttggaaagtaggctaacaagcattttgaagttagttaat 22754447  T
Q  114 aaggattctctatttgaaata 134  Q
    || ||||| ||||||||||||    
T  22754446 aaagattccctatttgaaata 22754426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 454 - 518
Target Start/End: Complemental strand, 17026813 - 17026750
Alignment:
Q  454 aatttcaaaccatgacaagtatttcactaacttatctaactccaaaatgaaaatcaaacagatat 518  Q
    ||||||||| ||||||||||||||||||||| ||||||||| ||||| | |||||||||||||||    
T  17026813 aatttcaaatcatgacaagtatttcactaacctatctaacttcaaaaag-aaatcaaacagatat 17026750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 423 - 516
Target Start/End: Original strand, 16603910 - 16604001
Alignment:
Q  423 gttgctaattccaaagagcaatcgcagacttaatttcaaaccatgacaagtatttcactaacttatctaactccaaaatgaaaatcaaacagat 516  Q
    |||||||||| |||||||||  | || |||||| |||||||||||| |||||||| |||||  |||||||||||||||   |||||||||||||    
T  16603910 gttgctaatttcaaagagcagcctcaaacttaacttcaaaccatgataagtatttaactaatctatctaactccaaaa--gaaatcaaacagat 16604001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 383 - 500
Target Start/End: Complemental strand, 19330887 - 19330770
Alignment:
Q  383 ataaccaagttctactagtatcccaccccaaacttagaacgttgctaattccaaagagcaatcgcagacttaatttcaaaccatgacaagtatttcacta 482  Q
    |||| ||||||||||| |||  ||||||||||||||    | || |||||||||||| ||| | || ||||||||||| | |||||||||||||||| ||    
T  19330887 ataatcaagttctacttgtactccaccccaaacttaaggtgatgttaattccaaagaacaacctcaaacttaatttcagatcatgacaagtatttcatta 19330788  T
Q  483 acttatctaactccaaaa 500  Q
    |  || ||||||||||||    
T  19330787 atctacctaactccaaaa 19330770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 111
Target Start/End: Complemental strand, 17027132 - 17027029
Alignment:
Q  8 atcatcacacacacatacaaagggcttttcaaggttataacgtgactgaggttaagttaggatatattttggaaagtaggctagcaagcac-ttggagtt 106  Q
    ||||||||||||||||| || || ||||| ||||||||||| ||| |||||||||| | ||||| ||||  ||||||||| || ||| ||| ||||||||    
T  17027132 atcatcacacacacatataa-ggccttttaaaggttataacatgattgaggttaaggtgggatacatttgagaaagtaggataacaaacactttggagtt 17027034  T
Q  107 agttc 111  Q
    |||||    
T  17027033 agttc 17027029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 391 - 467
Target Start/End: Complemental strand, 24319909 - 24319833
Alignment:
Q  391 gttctactagtatcccaccccaaacttagaacgttgctaattccaaagagcaatcgcagacttaatttcaaaccatg 467  Q
    ||||||||| || ||||||||||||||| || |||| |||||||||||||||| | || ||||| ||||||| ||||    
T  24319909 gttctactattaccccaccccaaacttaaaatgttgttaattccaaagagcaaccccaaacttagtttcaaaacatg 24319833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 450 - 516
Target Start/End: Complemental strand, 24840968 - 24840902
Alignment:
Q  450 acttaatttcaaaccatgacaagtatttcactaacttatctaactccaaaatgaaaatcaaacagat 516  Q
    |||||| ||||||  ||||||||| |||||||||| || |||||||||||| | |||||||||||||    
T  24840968 acttaacttcaaattatgacaagtctttcactaacctacctaactccaaaaaggaaatcaaacagat 24840902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 389 - 443
Target Start/End: Original strand, 26118082 - 26118136
Alignment:
Q  389 aagttctactagtatcccaccccaaacttagaacgttgctaattccaaagagcaa 443  Q
    |||||||||||||| | ||||||||||||| ||  ||||||||||||||||||||    
T  26118082 aagttctactagtaccacaccccaaacttaaaatattgctaattccaaagagcaa 26118136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 389 - 466
Target Start/End: Original strand, 24262826 - 24262903
Alignment:
Q  389 aagttctactagtatcccaccccaaacttagaacgttgctaattccaaagagcaatcgcagacttaatttcaaaccat 466  Q
    |||||||||||||| |||||| |||||||| |  |||||||||| |||||||||| | || |||||  ||||||||||    
T  24262826 aagttctactagtaccccaccacaaacttaaattgttgctaatttcaaagagcaaccccaaacttaccttcaaaccat 24262903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 391 - 443
Target Start/End: Complemental strand, 31599424 - 31599372
Alignment:
Q  391 gttctactagtatcccaccccaaacttagaacgttgctaattccaaagagcaa 443  Q
    ||||||||  || |||||||||||| || ||||||||||||||||||||||||    
T  31599424 gttctactgttaccccaccccaaacgtaaaacgttgctaattccaaagagcaa 31599372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 406 - 467
Target Start/End: Original strand, 9834246 - 9834307
Alignment:
Q  406 caccccaaacttagaacgttgctaattccaaagagcaatcgcagacttaatttcaaaccatg 467  Q
    ||||||||||||| || |||||||||| |||||||||| | || ||||| ||||||| ||||    
T  9834246 caccccaaacttaaaatgttgctaatttcaaagagcaaccccaaacttagtttcaaagcatg 9834307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 256
Target Start/End: Complemental strand, 17027018 - 17026945
Alignment:
Q  183 tgtcacaaccattattatgaggcactagctttcatttatgtagacaattcaaagaatttgggcactagtagaac 256  Q
    ||||||||||||| |||| ||| ||||||||||| || |  || || ||||||||||||||| |||| ||||||    
T  17027018 tgtcacaaccattgttataaggtactagctttcacttttagagtcagttcaaagaatttgggaactattagaac 17026945  T

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Target: chr2 (Bit Score: 79; Significance: 2e-36; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 78 - 266
Target Start/End: Complemental strand, 9504209 - 9504031
Alignment:
Q  78 ggaaagtaggctagcaagcacttgga-gttagttcttaaggattctctatttgaaatattttgcagatattttgtcatccaaacctgtaacttcattcac 176  Q
    ||||||||||||| ||||||||| || |||||||| ||||||||||||||||||||||||||      |||     | || ||||| |||||||||||||    
T  9504209 ggaaagtaggctaacaagcactttgaagttagttcctaaggattctctatttgaaatatttt------att-----accctaacctctaacttcattcac 9504121  T
Q  177 aaactgtgtcacaaccattattatgaggcactagctttcatttatgtagacaattcaaagaatttgggcactagtagaacaacttattat 266  Q
    ||||||||||||||||||| |||||||  |||||||||||||| || || || ||||||||||||||||||||||||||| | |||||||    
T  9504120 aaactgtgtcacaaccattgttatgagatactagctttcatttttggagtcacttcaaagaatttgggcactagtagaactaattattat 9504031  T

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Target: chr2; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 78 - 266
Target Start/End: Complemental strand, 9515575 - 9515397
Alignment:
Q  78 ggaaagtaggctagcaagcacttgga-gttagttcttaaggattctctatttgaaatattttgcagatattttgtcatccaaacctgtaacttcattcac 176  Q
    ||||||||||||| ||||||||| || |||||||| ||||||||||||||||||||||||||      |||     | || ||||| |||||||||||||    
T  9515575 ggaaagtaggctaacaagcactttgaagttagttcctaaggattctctatttgaaatatttt------att-----accctaacctctaacttcattcac 9515487  T
Q  177 aaactgtgtcacaaccattattatgaggcactagctttcatttatgtagacaattcaaagaatttgggcactagtagaacaacttattat 266  Q
    ||||||||||||||||||| |||||||  |||||||||||||| || || || ||||||||||||||||||||||||||| | |||||||    
T  9515486 aaactgtgtcacaaccattgttatgagatactagctttcatttttggagtcacttcaaagaatttgggcactagtagaactaattattat 9515397  T

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Target: chr2; HSP #3
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 99 - 264
Target Start/End: Original strand, 28278847 - 28279012
Alignment:
Q  99 ttggagttagttcttaaggattctctatttgaaatattttgcagatattttgtcatccaaacct-gtaacttcattcacaaactgtgtcacaaccattat 197  Q
    ||||||||||||| ||||||||| |||||| ||||| |||    || |||  |||||||||||| ||||||||||| ||||| ||| ||||||||||| |    
T  28278847 ttggagttagttcctaaggattccctatttaaaatactttaacaatcttta-tcatccaaaccttgtaacttcatttacaaattgtatcacaaccattgt 28278945  T
Q  198 tatgaggcactagctttcatttatgtagacaattcaaagaatttgggcactagtagaacaacttatt 264  Q
    ||||||| |||||||||||||| ||||| || |||||||||||||| |||||||||||| |||||||    
T  28278946 tatgaggtactagctttcatttttgtagtcagttcaaagaatttggacactagtagaactacttatt 28279012  T

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Target: chr2; HSP #4
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 383 - 518
Target Start/End: Complemental strand, 9503917 - 9503782
Alignment:
Q  383 ataaccaagttctactagtatcccaccccaaacttagaacgttgctaattccaaagagcaatcgcagacttaatttcaaaccatgacaagtatttcacta 482  Q
    |||||||||||||||| ||| || ||||||||||||  | ||| ||||||||||||||||| | || ||||||||| ||| |||||||||||||||||||    
T  9503917 ataaccaagttctacttgtagccaaccccaaacttaagatgttactaattccaaagagcaaccacaaacttaatttaaaatcatgacaagtatttcacta 9503818  T
Q  483 acttatctaactccaaaatgaaaatcaaacagatat 518  Q
    |  ||||||||||||||| | |||||||||| ||||    
T  9503817 atctatctaactccaaaaaggaaatcaaacatatat 9503782  T

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Target: chr2; HSP #5
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 383 - 518
Target Start/End: Complemental strand, 9515283 - 9515148
Alignment:
Q  383 ataaccaagttctactagtatcccaccccaaacttagaacgttgctaattccaaagagcaatcgcagacttaatttcaaaccatgacaagtatttcacta 482  Q
    |||||||||||||||| ||| || ||||||||||||  | ||| ||||||||||||||||| | || ||||||||| ||| |||||||||||||||||||    
T  9515283 ataaccaagttctacttgtagccaaccccaaacttaagatgttactaattccaaagagcaaccacaaacttaatttaaaatcatgacaagtatttcacta 9515184  T
Q  483 acttatctaactccaaaatgaaaatcaaacagatat 518  Q
    |  ||||||||||||||| | |||||||||| ||||    
T  9515183 atctatctaactccaaaaaggaaatcaaacatatat 9515148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 383 - 518
Target Start/End: Original strand, 28279133 - 28279269
Alignment:
Q  383 ataaccaagttctactagtatcccaccccaaacttagaacgttgctaattccaaagagcaatcgcagacttaatttcaaaccatgacaagtatttcacta 482  Q
    ||||||||||| |||||||| |||||||||||||||  | || |||||||| ||| || || | || |||||||||||||||||||||| ||||||||||    
T  28279133 ataaccaagttttactagtaccccaccccaaacttaatatgtggctaattctaaatagaaaccccaaacttaatttcaaaccatgacaaatatttcacta 28279232  T
Q  483 acttatctaactcc-aaaatgaaaatcaaacagatat 518  Q
    || ||| |||| || |||| | |||||||||| ||||    
T  28279233 acctatttaacgccgaaaagggaaatcaaacatatat 28279269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 383 - 499
Target Start/End: Original strand, 27867211 - 27867327
Alignment:
Q  383 ataaccaagttctactagtatcccaccccaaacttagaacgttgctaattccaaagagcaatcgcagacttaatttcaaaccatgacaagtatttcacta 482  Q
    |||||||||||||||||||| |||||| | ||| ||  | |||||||||| |||||||||| |  | | ||||||| |||||||||||| ||||||||||    
T  27867211 ataaccaagttctactagtaccccacctccaacataagatgttgctaatttcaaagagcaaccataaatttaattttaaaccatgacaaatatttcacta 27867310  T
Q  483 acttatctaactccaaa 499  Q
    | |||| ||||||||||    
T  27867311 atttatttaactccaaa 27867327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 386 - 482
Target Start/End: Original strand, 32292545 - 32292641
Alignment:
Q  386 accaagttctactagtatcccaccccaaacttagaacgttgctaattccaaagagcaatcgcagacttaatttcaaaccatgacaagtatttcacta 482  Q
    ||||||||||||||||| |||||| ||||||||  | ||| |||||| ||||||| |||| || |||||||||||||||| ||||| ||||||||||    
T  32292545 accaagttctactagtaccccacctcaaacttaagatgtttctaatttcaaagagtaatctcaaacttaatttcaaaccacgacaaatatttcacta 32292641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 386 - 499
Target Start/End: Complemental strand, 24434790 - 24434677
Alignment:
Q  386 accaagttctactagtatcccaccccaaacttagaacgttgctaattccaaagagcaatcgcagacttaatttcaaaccatgacaagtatttcactaact 485  Q
    ||||||||||||||||| |||||||||| ||||  | ||| |||||| |||| || |||| || |||||||||||||||| ||||| ||||||||||       
T  24434790 accaagttctactagtaccccaccccaagcttaagatgtttctaatttcaaaaagaaatcccaaacttaatttcaaaccacgacaaatatttcactagtc 24434691  T
Q  486 tatctaactccaaa 499  Q
    |||| |||||||||    
T  24434690 tatcaaactccaaa 24434677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 382 - 500
Target Start/End: Original strand, 22389546 - 22389664
Alignment:
Q  382 gataaccaagttctactagtatcccaccccaaacttagaacgttgctaattccaaagagcaatcgcagacttaatttcaaaccatgacaagtatttcact 481  Q
    ||||||||||||||||| ||| |||||| ||||||||  | ||| ||||||  |||||| |||| || ||||||||||||||||||  || |||||||||    
T  22389546 gataaccaagttctactggtaccccaccacaaacttaagatgtttctaatttgaaagagaaatctcaaacttaatttcaaaccatgttaattatttcact 22389645  T
Q  482 aacttatctaactccaaaa 500  Q
    ||  || ||||||| ||||    
T  22389646 aatctacctaactcaaaaa 22389664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 391 - 440
Target Start/End: Original strand, 25923374 - 25923423
Alignment:
Q  391 gttctactagtatcccaccccaaacttagaacgttgctaattccaaagag 440  Q
    ||||||||  ||||||||||||||||||  | ||||||||||||||||||    
T  25923374 gttctactgttatcccaccccaaacttaagatgttgctaattccaaagag 25923423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 386 - 499
Target Start/End: Complemental strand, 32243110 - 32242997
Alignment:
Q  386 accaagttctactagtatcccaccccaaacttagaacgttgctaattccaaagagcaatcgcagacttaatttcaaaccatgacaagtatttcactaact 485  Q
    |||||||||||||| || ||||| ||||| |||  | ||| ||||||  ||| || |||| || | |||||||||||||| ||||| ||||||||||       
T  32243110 accaagttctactaataccccactccaaaattaagatgtttctaattttaaaaagtaatcccatatttaatttcaaaccacgacaaatatttcactagtc 32243011  T
Q  486 tatctaactccaaa 499  Q
    |||| |||||||||    
T  32243010 tatcaaactccaaa 32242997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 2e-21; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 382 - 518
Target Start/End: Complemental strand, 23222778 - 23222642
Alignment:
Q  382 gataaccaagttctactagtatcccaccccaaacttagaacgttgctaattccaaagagcaa-tcgcagacttaatttcaaaccatgacaagtatttcac 480  Q
    |||||||||||||||||||||  |||||||||||||| || |||||||||| ||||||||||  |  | |||||||||||||  || ||||| | |||||    
T  23222778 gataaccaagttctactagtactccaccccaaacttaaaatgttgctaatttcaaagagcaagccttaaacttaatttcaaattattacaagaagttcac 23222679  T
Q  481 taacttatctaactccaaaatgaaaatcaaacagatat 518  Q
    |||| ||||||||||||||| | |||||||||| ||||    
T  23222678 taacctatctaactccaaaaag-aaatcaaacatatat 23222642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 389 - 454
Target Start/End: Original strand, 16115551 - 16115616
Alignment:
Q  389 aagttctactagtatcccaccccaaacttagaacgttgctaattccaaagagcaatcgcagactta 454  Q
    |||||||||||||| ||||||||||||||| || ||| ||||||| |||||| |||| || |||||    
T  16115551 aagttctactagtaccccaccccaaacttaaaatgtttctaattcaaaagagtaatcccaaactta 16115616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 423 - 518
Target Start/End: Complemental strand, 14396955 - 14396862
Alignment:
Q  423 gttgctaattccaaagagcaatcgcagacttaatttcaaaccatgacaagtatttcactaacttatctaactccaaaatgaaaatcaaacagatat 518  Q
    |||||||||| |||||| ||||| || | | |||||||||  || ||||||||||||||||  |||||||||| |||||  |||||||||| ||||    
T  14396955 gttgctaatttcaaagatcaatctcaaattaaatttcaaattatcacaagtatttcactaatctatctaactctaaaat--aaatcaaacatatat 14396862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 383 - 443
Target Start/End: Original strand, 16259532 - 16259592
Alignment:
Q  383 ataaccaagttctactagtatcccaccccaaacttagaacgttgctaattccaaagagcaa 443  Q
    ||||||||||| |||||||| || | ||||||||||||| ||| ||||| |||||||||||    
T  16259532 ataaccaagttatactagtacccaatcccaaacttagaatgtttctaataccaaagagcaa 16259592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0990 (Bit Score: 43; Significance: 0.000000000000007; HSPs: 2)
Name: scaffold0990
Description:

Target: scaffold0990; HSP #1
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 147 - 264
Target Start/End: Complemental strand, 2950 - 2833
Alignment:
Q  147 tttgtcatccaaacctgtaacttcattcacaaactgtgtcacaaccattattatgaggcactagctttcatttatgtagac-aattcaaagaatttgggc 245  Q
    |||| ||||||||| |||||||||||||||| ||| ||||||||||||| |||| ||  |||||||||||||| || |||| | ||||| |||||| |||    
T  2950 tttgacatccaaacttgtaacttcattcacatactttgtcacaaccattgttataagctactagctttcattt-tggagactagttcaatgaatttaggc 2852  T
Q  246 actagtagaacaacttatt 264  Q
    |||||  |||| |||||||    
T  2851 actagcggaactacttatt 2833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0990; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 382 - 489
Target Start/End: Complemental strand, 2721 - 2615
Alignment:
Q  382 gataaccaagttctactagtatcccaccccaaacttagaacgttgctaattccaaagagcaatcgcagacttaatttcaaaccatgacaagtatttcact 481  Q
    ||||| ||||||||| ||||| ||| |||||||||||  | |||||||||| |||||| ||| |  | | ||||||| |||| |||||||||||||||||    
T  2721 gataatcaagttctattagta-ccctccccaaacttaagatgttgctaatttcaaagaacaaccctaaatttaatttaaaacaatgacaagtatttcact 2623  T
Q  482 aacttatc 489  Q
    ||| ||||    
T  2622 aacctatc 2615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 391 - 436
Target Start/End: Original strand, 40276 - 40321
Alignment:
Q  391 gttctactagtatcccaccccaaacttagaacgttgctaattccaa 436  Q
    |||||||||||| ||||||||||||||| || ||||||| ||||||    
T  40276 gttctactagtaccccaccccaaacttaaaatgttgctagttccaa 40321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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