View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5650-Insertion-6 (Length: 590)
Name: NF5650-Insertion-6
Description: NF5650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5650-Insertion-6 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 409; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 7 - 590
Target Start/End: Original strand, 24460924 - 24461494
Alignment:
| Q |
7 |
agagttgacagaggcgatgatacgagcaaaggaatctctttcaccggcggtttgagccgccaccggtggcggcaaccatgcattgtagagatgcattttt |
106 |
Q |
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| T |
24460924 |
agagtcgacataggcgatgatacgagcaaaggaatctctttcgccggcagtttgagctgccaccggtggcggcaaccatgcattgtagagatgcattttt |
24461023 |
T |
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| Q |
107 |
taatcaaaagagtggttagatatagggacggaggaggtaattaatttttgattttgttcttgttactatgatgagaccgtcattagattcacaaggttaa |
206 |
Q |
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| T |
24461024 |
taatcaaaagagtggttagatatagggacagaggaggtaattaattgttgattttgttcttgttactatgatgaggccgtcattagattcacaaggttaa |
24461123 |
T |
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| Q |
207 |
ttgcttccaaccattttaacactctccattagcaaggtgatgtaaaatctaatctcatcttgctcatttcattaccacaatatttttgagttatgaaatc |
306 |
Q |
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| T |
24461124 |
ttgcttccaaccattttaacactctccattagcaaggtgatgtaaaatctaatctcatcttgctcatttcattaccacaacattttttagttatgaaatc |
24461223 |
T |
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| Q |
307 |
aagcaatgattatgtatttatactctttggacaaatgtcaccctataaataattcatatg----tgatgcacaagaaagcgaagaacaggttattgtgcc |
402 |
Q |
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| T |
24461224 |
aagcaatgattatgtatttatactctttggacaaatgtcaccctataaataattcatatgtcaatgatgcacaagaaagcgaagaac-ggttattgtgcc |
24461322 |
T |
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| Q |
403 |
tcttaaacccattattagccatgccatgtattgtggcaaatagtttgaattactctcaacgaaaactcgagaatgacctggcatattttannnnnnnnaa |
502 |
Q |
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| T |
24461323 |
tctttaac---------------cgatgtattgtggcaaatagttcgaattactc-caacgaaaactcaagaatgatctggcatatgtttttttttttaa |
24461406 |
T |
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| Q |
503 |
gggaacgtggcatatagttcgaattacaagctgaagtcggatttcccttaccaactgaaaattcttcgttctcctctttcatctcctt |
590 |
Q |
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| T |
24461407 |
gggaacgtcgcatatagttcgaattacaagctgaagtcggatttcccttaccaactgaaaattcttcgttctcctctttcatctcctt |
24461494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 7 - 107
Target Start/End: Original strand, 24479087 - 24479187
Alignment:
| Q |
7 |
agagttgacagaggcgatgatacgagcaaaggaatctctttcaccggcggtttgagccgccaccggtggcggcaaccatgcattgtagagatgcattttt |
106 |
Q |
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| T |
24479087 |
agagttgacggcggcgatgatgcgagcaaaggaatctctttcaccggcggtttgagccgccaccggtggcggcaaccatgcattgtagagatgcattttt |
24479186 |
T |
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| Q |
107 |
t |
107 |
Q |
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| T |
24479187 |
t |
24479187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 171 - 264
Target Start/End: Original strand, 24479494 - 24479585
Alignment:
| Q |
171 |
actatgatgagaccgtcattagattcacaaggttaattgcttccaaccattttaacactctccattagcaaggtgatgtaaaatctaatctcat |
264 |
Q |
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| T |
24479494 |
actatgatgaagccgccattagattca--agggtaattgcttccaactattttaacactctccattagcaaggtgaagcaaaatataatctcat |
24479585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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