View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5650_high_5 (Length: 416)
Name: NF5650_high_5
Description: NF5650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5650_high_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 20 - 373
Target Start/End: Original strand, 2628697 - 2629050
Alignment:
| Q |
20 |
cctggttggtggtggccaaaccaaacacagtacatagcttcttacatttgtgcctcgtgtcctgtatggtcttatattgttgccacgccttctcttattg |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
2628697 |
cctggttggtggtggccaaaccaaacacagtacatagcttcttacatttgtgcctcgtgtcctgtatggccttatattgttgccacgccttctcttattg |
2628796 |
T |
|
| Q |
120 |
tcctgctttccaacatttccaactcattctcaatcctatcatcaaaccctttattcttactctttctcacttgcattatgtggggaatcaacttgagaag |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
2628797 |
tcctgctttccaacatttccaactcattctcaatcctatcatcaaaccctttattcttactctttctcacttgcattatgtgaggaatcaacttgagaag |
2628896 |
T |
|
| Q |
220 |
attaagaaggatagtttatgtttatggtatatgtaataggaaaatatttgatgtttaatgcaccattagtccagggaaataatctcattggccacaaacc |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2628897 |
attaagaaggatagtttatgtttatggtatatgtaataggaaaatatttgatgtttaatgcaccattagtccagggaaataatctcattggccacaaacc |
2628996 |
T |
|
| Q |
320 |
tgtgatttccgccaaaatcaactgaaaattttctcaatttggtcatataagatg |
373 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2628997 |
tgtgatttccgccaaaatcaactgaaaattttctcaatttggtcatataagatg |
2629050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University