View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5650_high_6 (Length: 365)

Name: NF5650_high_6
Description: NF5650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5650_high_6
NF5650_high_6
[»] chr8 (16 HSPs)
chr8 (18-302)||(17139507-17139785)
chr8 (22-302)||(17157837-17158111)
chr8 (209-302)||(17155145-17155238)
chr8 (35-127)||(17132803-17132893)
chr8 (299-354)||(17139397-17139452)
chr8 (299-354)||(17155035-17155090)
chr8 (243-296)||(17139414-17139467)
chr8 (243-296)||(17155052-17155105)
chr8 (170-223)||(17158244-17158297)
chr8 (78-135)||(17158323-17158380)
chr8 (299-354)||(17158166-17158226)
chr8 (93-135)||(17139252-17139294)
chr8 (93-135)||(17154890-17154932)
chr8 (170-223)||(17139326-17139379)
chr8 (170-223)||(17154964-17155017)
chr8 (18-50)||(17137349-17137381)
[»] scaffold0932 (1 HSPs)
scaffold0932 (21-301)||(2836-3110)
[»] scaffold0478 (7 HSPs)
scaffold0478 (18-302)||(7646-7924)
scaffold0478 (18-73)||(2475-2530)
scaffold0478 (299-354)||(7536-7591)
scaffold0478 (170-223)||(13244-13297)
scaffold0478 (93-135)||(7391-7433)
scaffold0478 (170-223)||(7465-7518)
scaffold0478 (243-296)||(7553-7606)
[»] scaffold0628 (5 HSPs)
scaffold0628 (48-302)||(641-889)
scaffold0628 (299-354)||(531-586)
scaffold0628 (78-135)||(371-428)
scaffold0628 (243-291)||(548-596)
scaffold0628 (170-223)||(460-513)
[»] chr7 (6 HSPs)
chr7 (210-302)||(11297237-11297329)
chr7 (18-68)||(11314075-11314125)
chr7 (301-338)||(11297143-11297180)
chr7 (243-296)||(11297144-11297197)
chr7 (78-135)||(11317362-11317419)
chr7 (170-215)||(11317451-11317496)
[»] scaffold0009 (1 HSPs)
scaffold0009 (203-241)||(71230-71268)
[»] chr1 (1 HSPs)
chr1 (299-357)||(14177525-14177582)
[»] scaffold0752 (1 HSPs)
scaffold0752 (170-223)||(45-98)


Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 18 - 302
Target Start/End: Complemental strand, 17139785 - 17139507
Alignment:
Q  18 gttcaagccaacattacgtggataatactcatcataaaagtgttaggagagaaactgacacacaaattactattacaagaatatgaatgttcatatgtat 117  Q
    |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||    
T  17139785 gttcaagccaacattatgtggataataatcatcataaaagtgttaggagagaaactgacaca--aattactattacaagaatattaatgttcatatgtat 17139688  T
Q  118 aagaaaaaagtaataatannnnnnnnnnnnnnnagaagtgttaccactttgcttggaaggaattttgttgaaaatgtcatgcaataatagactatatagc 217  Q
    |||||||||| |||||||               |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  17139687 aagaaaaaagaaataataagagagggaga----agaagtgttaccactttgcttggaaggaattttgttgaaaatgtcatgcaataataaactatatagc 17139592  T
Q  218 aactttatgaaggtcaacttaaaacataactttgtatgatttgagagacaaatgaaggctataagtgttattttgagttgattat 302  Q
    ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  17139591 aactttaagaaggtcaacttgaaacataactttgtatgatttgagagacaaatgaaggctataagtgttattttgagttaattat 17139507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 22 - 302
Target Start/End: Original strand, 17157837 - 17158111
Alignment:
Q  22 aagccaacattacgtggataatactcatcataaaagtgttaggagagaaactgacacacaaattactattacaagaatatgaatgttcatatgtataaga 121  Q
    |||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||||||    
T  17157837 aagccaacattatgtggataatactcattataaaggtgttaggagagaaactgacaca--aattactattacaagaatattaatgttcatatgtataaga 17157934  T
Q  122 aaaaagtaataatannnnnnnnnnnnnnnagaagtgttaccactttgcttggaaggaattttgttgaaaatgtcatgcaataatagactatatagcaact 221  Q
    |||||| ||| |||               ||||||||||||||||||||||||||||| |||| | |||||||||| |||||||||||||||||||||||    
T  17157935 aaaaaggaatgataagagagggaga----agaagtgttaccactttgcttggaaggaagtttgataaaaatgtcattcaataatagactatatagcaact 17158030  T
Q  222 ttatgaaggtcaacttaaaacataactttgtatgatttgagagacaaatgaaggctataagtgttattttgagttgattat 302  Q
    ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  17158031 ttatgaaggtcaatttgaaacataactttgtatgatttgagagacaaatgaaggctataagtgttattttgagttaattat 17158111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 209 - 302
Target Start/End: Complemental strand, 17155238 - 17155145
Alignment:
Q  209 ctatatagcaactttatgaaggtcaacttaaaacataactttgtatgatttgagagacaaatgaaggctataagtgttattttgagttgattat 302  Q
    |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  17155238 ctatatagcacctttatgaaggtcaacttgaaacataactttgtatgatttgagagacaaatgaagggtataagtgttattttgagttaattat 17155145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 35 - 127
Target Start/End: Complemental strand, 17132893 - 17132803
Alignment:
Q  35 gtggataatactcatcataaaagtgttaggagagaaactgacacacaaattactattacaagaatatgaatgttcatatgtataagaaaaaag 127  Q
    |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||| ||||||  |||||||||||||||||    
T  17132893 gtggataatactcatcataaaagtgttaggagagaaactga--cacaaattactattacaagaatattaatgtttgtatgtataagaaaaaag 17132803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 299 - 354
Target Start/End: Complemental strand, 17139452 - 17139397
Alignment:
Q  299 ttataccctttatttgtctctcaaatcagaaaaagttatagtggtagtttcttcat 354  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17139452 ttataccctttatttgtctctcaaatcagaaaaagttatagtggtagtttcttcat 17139397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 299 - 354
Target Start/End: Complemental strand, 17155090 - 17155035
Alignment:
Q  299 ttataccctttatttgtctctcaaatcagaaaaagttatagtggtagtttcttcat 354  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17155090 ttataccctttatttgtctctcaaatcagaaaaagttatagtggtagtttcttcat 17155035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 243 - 296
Target Start/End: Original strand, 17139414 - 17139467
Alignment:
Q  243 ataactttgtatgatttgagagacaaatgaaggctataagtgttattttgagtt 296  Q
    |||||||| | ||||||||||||||||| |||| ||||||||||||||| ||||    
T  17139414 ataactttttctgatttgagagacaaataaagggtataagtgttattttaagtt 17139467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 243 - 296
Target Start/End: Original strand, 17155052 - 17155105
Alignment:
Q  243 ataactttgtatgatttgagagacaaatgaaggctataagtgttattttgagtt 296  Q
    |||||||| | ||||||||||||||||| |||| ||||||||||||||| ||||    
T  17155052 ataactttttctgatttgagagacaaataaagggtataagtgttattttaagtt 17155105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 170 - 223
Target Start/End: Complemental strand, 17158297 - 17158244
Alignment:
Q  170 ttggaaggaattttgttgaaaatgtcatgcaataatagactatatagcaacttt 223  Q
    |||||||||| |||| | ||||||||||| |||||||||||||||| |||||||    
T  17158297 ttggaaggaagtttgattaaaatgtcatgaaataatagactatatatcaacttt 17158244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 78 - 135
Target Start/End: Complemental strand, 17158380 - 17158323
Alignment:
Q  78 cacaaattactattacaagaatatgaatgttcatatgtataagaaaaaagtaataata 135  Q
    |||||| || |||| ||||||||| |||||||||||||||||||| |||| |||||||    
T  17158380 cacaaactaatatttcaagaatattaatgttcatatgtataagaagaaaggaataata 17158323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 354
Target Start/End: Original strand, 17158166 - 17158226
Alignment:
Q  299 ttataccctttatttgtctc-----tcaaatcagaaaaagttatagtggtagtttcttcat 354  Q
    ||||||||||||||||||||     || |||||||||||||||||||||||||||| ||||    
T  17158166 ttataccctttatttgtctctctaatctaatcagaaaaagttatagtggtagtttcctcat 17158226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 135
Target Start/End: Original strand, 17139252 - 17139294
Alignment:
Q  93 caagaatatgaatgttcatatgtataagaaaaaagtaataata 135  Q
    ||||||||| |||||||||||||||||||| |||| |||||||    
T  17139252 caagaatattaatgttcatatgtataagaagaaaggaataata 17139294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 135
Target Start/End: Original strand, 17154890 - 17154932
Alignment:
Q  93 caagaatatgaatgttcatatgtataagaaaaaagtaataata 135  Q
    ||||||||| |||||||||||||||||||| |||| |||||||    
T  17154890 caagaatattaatgttcatatgtataagaagaaaggaataata 17154932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 223
Target Start/End: Original strand, 17139326 - 17139379
Alignment:
Q  170 ttggaaggaattttgttgaaaatgtcatgcaataatagactatatagcaacttt 223  Q
    |||||||||| |||| | ||||||||||| ||||||||| |||||| |||||||    
T  17139326 ttggaaggaagtttgattaaaatgtcatgaaataatagaatatatatcaacttt 17139379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 223
Target Start/End: Original strand, 17154964 - 17155017
Alignment:
Q  170 ttggaaggaattttgttgaaaatgtcatgcaataatagactatatagcaacttt 223  Q
    ||||||| || |||| | ||||||||||| |||||||||||||||| |||||||    
T  17154964 ttggaagaaagtttgattaaaatgtcatgaaataatagactatatatcaacttt 17155017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 17137381 - 17137349
Alignment:
Q  18 gttcaagccaacattacgtggataatactcatc 50  Q
    |||||||||||||||| ||||||||||||||||    
T  17137381 gttcaagccaacattatgtggataatactcatc 17137349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0932 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: scaffold0932
Description:

Target: scaffold0932; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 21 - 301
Target Start/End: Original strand, 2836 - 3110
Alignment:
Q  21 caagccaacattacgtggataatactcatcataaaagtgttaggagagaaactgacacacaaattactattacaagaatatgaatgttcatatgtataag 120  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| ||| ||||||||||||||    
T  2836 caagccaacattatgtggataatactcatcataaaagtgttaggagagaaactgacaca--aattactattacaagaatattaatattcatatgtataag 2933  T
Q  121 aaaaaagtaataatannnnnnnnnnnnnnnagaagtgttaccactttgcttggaaggaattttgttgaaaatgtcatgcaataatagactatatagcaac 220  Q
    ||||||| |||||||               |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  2934 aaaaaaggaataataagagagggaga----agaagtgttaccactttgcttggaaggaattttgttgaaaatgtcatgcaataatagactatatagcaat 3029  T
Q  221 tttatgaaggtcaacttaaaacataactttgtatgatttgagagacaaatgaaggctataagtgttattttgagttgatta 301  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  3030 tttatgaaggtcaacttgaaacataactttgtatgatttgagagacaaatgaatgctataagtgttattttgagttaatta 3110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0478 (Bit Score: 176; Significance: 1e-94; HSPs: 7)
Name: scaffold0478
Description:

Target: scaffold0478; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 18 - 302
Target Start/End: Complemental strand, 7924 - 7646
Alignment:
Q  18 gttcaagccaacattacgtggataatactcatcataaaagtgttaggagagaaactgacacacaaattactattacaagaatatgaatgttcatatgtat 117  Q
    ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||  |||||||||||||| ||||| |||||||||||||||    
T  7924 gttcaagccaatattatgtggataatactcatcataaaagtgttaggagagaaacttacaca--aattactattacaataatattaatgttcatatgtat 7827  T
Q  118 aagaaaaaagtaataatannnnnnnnnnnnnnnagaagtgttaccactttgcttggaaggaattttgttgaaaatgtcatgcaataatagactatatagc 217  Q
    |||||||||||||||| |               |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  7826 aagaaaaaagtaataacaagagagggaga----agaagtgttaccactttgcttggaaggaattttgttgataatgtcatgcaataatagactatatagc 7731  T
Q  218 aactttatgaaggtcaacttaaaacataactttgtatgatttgagagacaaatgaaggctataagtgttattttgagttgattat 302  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||  ||||||||||| |||||    
T  7730 aactttatgaaggtcaacttgaaacataactttgtatgatttgagagacaaatgaacgctataagttctattttgagttaattat 7646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0478; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 2530 - 2475
Alignment:
Q  18 gttcaagccaacattacgtggataatactcatcataaaagtgttaggagagaaact 73  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2530 gttcaagccaacattacgtggataatactcatcataaaagtgttaggagagaaact 2475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0478; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 299 - 354
Target Start/End: Complemental strand, 7591 - 7536
Alignment:
Q  299 ttataccctttatttgtctctcaaatcagaaaaagttatagtggtagtttcttcat 354  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  7591 ttataccctttatttgactctcaaatcagaaaaagttatagtggtagtttcttcat 7536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0478; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 170 - 223
Target Start/End: Original strand, 13244 - 13297
Alignment:
Q  170 ttggaaggaattttgttgaaaatgtcatgcaataatagactatatagcaacttt 223  Q
    |||||||||| |||| | ||||||||||| |||||||||||||||| |||||||    
T  13244 ttggaaggaagtttgattaaaatgtcatgaaataatagactatatatcaacttt 13297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0478; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 135
Target Start/End: Original strand, 7391 - 7433
Alignment:
Q  93 caagaatatgaatgttcatatgtataagaaaaaagtaataata 135  Q
    ||||||||| |||||||||||||||||||| |||| |||||||    
T  7391 caagaatattaatgttcatatgtataagaagaaaggaataata 7433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0478; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 223
Target Start/End: Original strand, 7465 - 7518
Alignment:
Q  170 ttggaaggaattttgttgaaaatgtcatgcaataatagactatatagcaacttt 223  Q
    |||||||||| |||| | ||||||||||| ||||||||| |||||| |||||||    
T  7465 ttggaaggaagtttgattaaaatgtcatgaaataatagaatatatatcaacttt 7518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0478; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 296
Target Start/End: Original strand, 7553 - 7606
Alignment:
Q  243 ataactttgtatgatttgagagacaaatgaaggctataagtgttattttgagtt 296  Q
    |||||||| | ||||||||||| ||||| |||| ||||||||||||||| ||||    
T  7553 ataactttttctgatttgagagtcaaataaagggtataagtgttattttaagtt 7606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0628 (Bit Score: 158; Significance: 5e-84; HSPs: 5)
Name: scaffold0628
Description:

Target: scaffold0628; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 48 - 302
Target Start/End: Complemental strand, 889 - 641
Alignment:
Q  48 atcataaaagtgttaggagagaaactgacacacaaattactattacaagaatatgaatgttcatatgtataagaaaaaagtaataatannnnnnnnnnnn 147  Q
    ||||| ||||||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||||| ||||||||||||||                
T  889 atcattaaagtgttaggagagaaactgacaca--aattactattacaagaatattaatgttcatatgtataagtaaaaagtaataataagagagggaga- 793  T
Q  148 nnnagaagtgttaccactttgcttggaaggaattttgttgaaaatgtcatgcaataatagactatatagcaactttatgaaggtcaacttaaaacataac 247  Q
       ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||     
T  792 ---agaagtgttaccactttgcttggaaggaagtttgatgaaaatgtcatgcaataatagactatatagcaactttatgaaggtcaacttgaaacataat 696  T
Q  248 tttgtatgatttgagagacaaatgaaggctataagtgttattttgagttgattat 302  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  695 tttttatgatttgagagacaaatgaaggctataagtgttattttgagttaattat 641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0628; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 299 - 354
Target Start/End: Complemental strand, 586 - 531
Alignment:
Q  299 ttataccctttatttgtctctcaaatcagaaaaagttatagtggtagtttcttcat 354  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  586 ttatacccttcatttgtctctcaaatcagaaaaagttatagtggtagtttcttcat 531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0628; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 78 - 135
Target Start/End: Original strand, 371 - 428
Alignment:
Q  78 cacaaattactattacaagaatatgaatgttcatatgtataagaaaaaagtaataata 135  Q
    ||||||||| |||| ||||||||| |||||||||||||||||||| ||||||||||||    
T  371 cacaaattaatatttcaagaatattaatgttcatatgtataagaagaaagtaataata 428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0628; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 243 - 291
Target Start/End: Original strand, 548 - 596
Alignment:
Q  243 ataactttgtatgatttgagagacaaatgaaggctataagtgttatttt 291  Q
    |||||||| | |||||||||||||||||||||| |||||||||||||||    
T  548 ataactttttctgatttgagagacaaatgaagggtataagtgttatttt 596  T

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Target: scaffold0628; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 170 - 223
Target Start/End: Original strand, 460 - 513
Alignment:
Q  170 ttggaaggaattttgttgaaaatgtcatgcaataatagactatatagcaacttt 223  Q
    |||||||||| |||| | ||||||||||| |||||||||||||||| |||||||    
T  460 ttggaaggaagtttgattaaaatgtcatgaaataatagactatatatcaacttt 513  T

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Target: chr7 (Bit Score: 73; Significance: 3e-33; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 210 - 302
Target Start/End: Complemental strand, 11297329 - 11297237
Alignment:
Q  210 tatatagcaactttatgaaggtcaacttaaaacataactttgtatgatttgagagacaaatgaaggctataagtgttattttgagttgattat 302  Q
    |||||||||||||||||||||| ||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||    
T  11297329 tatatagcaactttatgaaggtaaacttgaaacataactttgtgtaatttgagagacaaatgaaggctataagtgttattttgagttaattat 11297237  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 11314125 - 11314075
Alignment:
Q  18 gttcaagccaacattacgtggataatactcatcataaaagtgttaggagag 68  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  11314125 gttcaagccaacattatgtggataatactcatcataaaagtgttaggagag 11314075  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 301 - 338
Target Start/End: Complemental strand, 11297180 - 11297143
Alignment:
Q  301 ataccctttatttgtctctcaaatcagaaaaagttata 338  Q
    |||||||| |||||||||||||||||||||||||||||    
T  11297180 atacccttcatttgtctctcaaatcagaaaaagttata 11297143  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 243 - 296
Target Start/End: Original strand, 11297144 - 11297197
Alignment:
Q  243 ataactttgtatgatttgagagacaaatgaaggctataagtgttattttgagtt 296  Q
    |||||||| | |||||||||||||||||||||| ||| ||||||||||| ||||    
T  11297144 ataactttttctgatttgagagacaaatgaagggtattagtgttattttaagtt 11297197  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 78 - 135
Target Start/End: Original strand, 11317362 - 11317419
Alignment:
Q  78 cacaaattactattacaagaatatgaatgttcatatgtataagaaaaaagtaataata 135  Q
    ||||||||| |||| ||||||||| |||||||||||||||| ||| |||| |||||||    
T  11317362 cacaaattaatatttcaagaatattaatgttcatatgtatatgaagaaaggaataata 11317419  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 215
Target Start/End: Original strand, 11317451 - 11317496
Alignment:
Q  170 ttggaaggaattttgttgaaaatgtcatgcaataatagactatata 215  Q
    |||||||||| |||| | ||||||||||| ||||||||||||||||    
T  11317451 ttggaaggaagtttgattaaaatgtcatgaaataatagactatata 11317496  T

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Target: scaffold0009 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 241
Target Start/End: Complemental strand, 71268 - 71230
Alignment:
Q  203 aatagactatatagcaactttatgaaggtcaacttaaaa 241  Q
    ||||||||||||||||||||||||||||  |||||||||    
T  71268 aatagactatatagcaactttatgaaggctaacttaaaa 71230  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 357
Target Start/End: Original strand, 14177525 - 14177582
Alignment:
Q  299 ttataccctttatttgtctctcaaatcagaaaaagttatagtggtagtttcttcatctc 357  Q
    ||||||||||||||| |||||||||| | ||||||||||||||| |||||  |||||||    
T  14177525 ttataccctttatttctctctcaaat-aaaaaaagttatagtggcagttttgtcatctc 14177582  T

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Target: scaffold0752 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0752
Description:

Target: scaffold0752; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 223
Target Start/End: Complemental strand, 98 - 45
Alignment:
Q  170 ttggaaggaattttgttgaaaatgtcatgcaataatagactatatagcaacttt 223  Q
    |||||||||| |||| | ||||| ||||| |||||||||||||||| |||||||    
T  98 ttggaaggaagtttgattaaaatatcatgaaataatagactatatatcaacttt 45  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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