View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5650_low_1 (Length: 685)
Name: NF5650_low_1
Description: NF5650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5650_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 467; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 1 - 625
Target Start/End: Complemental strand, 49298473 - 49297857
Alignment:
| Q |
1 |
tgagctatggtatagtgatggagatatagatgtgatcatatctttctgtttagaaacttttttgttaccgatatcattgtatatgtnnnnnnnnnnnnnn |
100 |
Q |
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| T |
49298473 |
tgagctatggtatagtgatggagatatagatgttatcatatctttctgtttagaaacttttttgttatcga-atcattgtatatggaggggggcacc--- |
49298378 |
T |
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| Q |
101 |
ntgtcgtcaatatttgaacgagtgtaaactctaatgactattttgaccctgtgaataatgttattgaaatgactctcttaaccgcgtgaggatcatgatc |
200 |
Q |
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| T |
49298377 |
--gtcgtcaatatttgaacgagtgtaaactctaatgactattttgaccctgtgaat---gtaattgaaatgactctcttaaccgcgtgaggatcatgatc |
49298283 |
T |
|
| Q |
201 |
aaaaacgaaaaaggtattaacttgatttcccgcccaaaacagggaagttttgcacggaataaggaagaaattcaatgtcttggtatatctctataaacgg |
300 |
Q |
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| T |
49298282 |
gaaaacgaaaaaggtattaacttgatttcccgcccaaaacagggaagttttgcacggaataaggaagaaattcaatgtcttggtatatctctataaacgg |
49298183 |
T |
|
| Q |
301 |
caacggcaatccatgtgattannnnnnnn-cttaattattacttttaagttttagcttctttaataaaacaaactcatatcttttgtttccagatttgtt |
399 |
Q |
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| T |
49298182 |
caacggcaatccatgtgattatttttttttcttaattattacttttaagttttagcttctttaataaaacacactcatatcttttgtttcctgatttgtt |
49298083 |
T |
|
| Q |
400 |
aatgaagaaaggccggaacactaggtgtcatctagaaggaacatttggcaccgtatgtgggaagagaaagaatcttcccactaatttctcatcatttgag |
499 |
Q |
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| T |
49298082 |
aatgaagaaaggccggaacactaggtgtcatctagaaggaacatttggcaccgtatgtgggaagagaaagaatcttctcactgatttctcatcatttgag |
49297983 |
T |
|
| Q |
500 |
aacatatgatacgatccacatctagtggcaaacgtggggaaaggatggcgatgattcaaatggcaagcaataagtttcctcgacaagtgcaaatacgtag |
599 |
Q |
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| T |
49297982 |
aacatatgatacgatccacatccagtggcaaacgtgaagaaaggatggcgatgattcaaatggcaagcaataagtttcctcgacaagtgcaaatacgtag |
49297883 |
T |
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| Q |
600 |
aaacttcgttgagacacgctttcaac |
625 |
Q |
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| T |
49297882 |
aaacttcggtgagacacgctttcaac |
49297857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 622 - 671
Target Start/End: Complemental strand, 49297479 - 49297430
Alignment:
| Q |
622 |
caacctcattttgttagataatctacaagttctggaggaagtaagtgatg |
671 |
Q |
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| T |
49297479 |
caacctcattttgttagataatctacaagttctggaggaagtaagagatg |
49297430 |
T |
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