View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5650_low_10 (Length: 317)
Name: NF5650_low_10
Description: NF5650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5650_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 12 - 303
Target Start/End: Original strand, 10546388 - 10546679
Alignment:
| Q |
12 |
atgaacacattgattttatttgaagaaataggtggaaatcctcaaaatgtttccttcctaactgagacaacaaaaactatttgtgctaatgtatatgaag |
111 |
Q |
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| T |
10546388 |
atgaacacattgattttatttgaagaaataggtggaaatcctcaaaatgtttccttcctaactgagacaacaaaaactatttgtgctaatgtatatgaag |
10546487 |
T |
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| Q |
112 |
gtggaaaattagaactatcatgccaaaatggacaagtaattacttcaatcaattttgctagttttggaaatccacaaggtcaatgtggttctttcaagaa |
211 |
Q |
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| T |
10546488 |
gtggaaaattagaactatcatgccaaaatggacaagtaattacttcaatcaattttgctagttttggaaatccacaaggtcaatgtggttctttcaagaa |
10546587 |
T |
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| Q |
212 |
aggttcttgggaatctttgaatagccaatctatgatggaaagttcatgtataggaaaaactggttgtggatttactgtcactagagatatgt |
303 |
Q |
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| T |
10546588 |
aggttcttgggaatctttgaatagccaatctatgatggaaacttcatgtataggaaaaactggttgtggatttactgtcactagagatatgt |
10546679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 12 - 214
Target Start/End: Original strand, 9644451 - 9644653
Alignment:
| Q |
12 |
atgaacacattgattttatttgaagaaataggtggaaatcctcaaaatgtttccttcctaactgagacaacaaaaactatttgtgctaatgtatatgaag |
111 |
Q |
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|||||||||||| |||||||||||||||| |||||||||||||||| |||| |||| ||||| ||||||| |||||||||||||||||||||||||| |
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| T |
9644451 |
atgaacacattggttttatttgaagaaattggtggaaatcctcaaagtgttcaattccaaactgtgacaacaggaactatttgtgctaatgtatatgaag |
9644550 |
T |
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| Q |
112 |
gtggaaaattagaactatcatgccaaaatggacaagtaattacttcaatcaattttgctagttttggaaatccacaaggtcaatgtggttctttcaagaa |
211 |
Q |
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| T |
9644551 |
gtgcacagtttgaactatcatgtcaaagtggacaagtaatgtcacaaattcaattcgctagctatggaaatccagaaggtcagtgtggttcttttaagaa |
9644650 |
T |
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| Q |
212 |
agg |
214 |
Q |
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||| |
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| T |
9644651 |
agg |
9644653 |
T |
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