View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5650_low_11 (Length: 312)
Name: NF5650_low_11
Description: NF5650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5650_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 2223149 - 2222845
Alignment:
| Q |
1 |
ttcatggagattcacaaaaacacaaacaagaaatggggaagtacaaaaaaggaatcaaaatcattagaaccaattacaacaactactccaaagatgaaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |
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| T |
2223149 |
ttcatggagattcacaaaaacacaaacaagaaatggggtggttccaaaaaggaatcaaaatcattagaaccaattgcaactactactccaaagatgaaat |
2223050 |
T |
|
| Q |
101 |
ggaagaaaatgatgatattcttcaacacaacaaaacctacccaaaaccaaaacccacctcaagaatttctatgcaccatttccggttctctcatgtctga |
200 |
Q |
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|||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
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| T |
2223049 |
ggaagaaaatgatgattttcttcaacacaacaaaagctacccaaaaccaaaacccacctcaagaatttctatgccccatttcaggttctctcatgtctga |
2222950 |
T |
|
| Q |
201 |
tcctgcaattgcctcccccggttattcttttcaccgaacctcagtccaagcatgtaaaaatctccactacaaccccccacttgctgatgtcaccatccaa |
300 |
Q |
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||||| ||||| |||| | ||| |||| ||| ||||||||||||| |||||||||||||||||| |||||| ||||| ||||||||||| ||||| || | |
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| T |
2222949 |
tcctgtaattgtctcctctggtcattcctttgaccgaacctcagtacaagcatgtaaaaatctcaactacaccccccaacttgctgatggcaccacccca |
2222850 |
T |
|
| Q |
301 |
aattt |
305 |
Q |
| |
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||||| |
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|
| T |
2222849 |
aattt |
2222845 |
T |
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